FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8246, 245 aa
  1>>>pF1KB8246 245 - 245 aa - 245 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1802+/-0.00087; mu= 14.4684+/- 0.052
 mean_var=53.7839+/-10.656, 0's: 0 Z-trim(104.1): 16  B-trim: 0 in 0/51
 Lambda= 0.174883
 statistics sampled from 7732 (7735) to 7732 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.613), E-opt: 0.2 (0.238), width:  16
 Scan time:  1.680

The best scores are:                                      opt bits E(32554)
CCDS13249.1 EIF6 gene_id:3692|Hs108|chr20          ( 245) 1593 409.9 8.2e-115
CCDS13250.1 EIF6 gene_id:3692|Hs108|chr20          ( 226)  767 201.4 4.1e-52


>>CCDS13249.1 EIF6 gene_id:3692|Hs108|chr20               (245 aa)
 initn: 1593 init1: 1593 opt: 1593  Z-score: 2174.8  bits: 409.9 E(32554): 8.2e-115
Smith-Waterman score: 1593; 100.0% identity (100.0% similar) in 245 aa overlap (1-245:1-245)

               10        20        30        40        50        60
pF1KB8 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RMCVGNRHGLLVPNNTTDQELQHIRNSLPDTVQIRRVEERLSALGNVTTCNDYVALVHPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RMCVGNRHGLLVPNNTTDQELQHIRNSLPDTVQIRRVEERLSALGNVTTCNDYVALVHPD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL
              190       200       210       220       230       240

            
pF1KB8 IDSLT
       :::::
CCDS13 IDSLT
            

>>CCDS13250.1 EIF6 gene_id:3692|Hs108|chr20               (226 aa)
 initn: 992 init1: 767 opt: 767  Z-score: 1049.0  bits: 201.4 E(32554): 4.1e-52
Smith-Waterman score: 939; 68.3% identity (73.9% similar) in 249 aa overlap (1-245:1-226)

               10        20        30        40        50        60
pF1KB8 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIG
       :::::::::::::::::::::::::::::::::::               ..  :    :
CCDS13 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYRC-------------GGSPGAYGGG
               10        20        30                     40       

               70        80          90       100       110        
pF1KB8 RMCVGNRHGLLVPNNTTDQELQHIRNSLP--DTVQIRRVEERLSALGNVTTCNDY--VAL
       . :.:      : .. . .    .   ::    :..  :  : :.      :.    .: 
CCDS13 EACAG------VKSSGSGR----VPAPLPRHHRVHVPTVCSRASSPIPSPWCTRLSPAAA
        50              60            70        80        90       

        120       130       140       150       160       170      
pF1KB8 VHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSL
              :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SSGACVWETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSL
       100       110       120       130       140       150       

        180       190       200       210       220       230      
pF1KB8 LQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSM
       160       170       180       190       200       210       

        240     
pF1KB8 RDSLIDSLT
       :::::::::
CCDS13 RDSLIDSLT
       220      




245 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:57:34 2016 done: Fri Nov  4 10:57:34 2016
 Total Scan time:  1.680 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]