FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8231, 211 aa
  1>>>pF1KB8231 211 - 211 aa - 211 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5513+/-0.000285; mu= 13.9900+/- 0.018
 mean_var=90.3296+/-18.965, 0's: 0 Z-trim(120.5): 2  B-trim: 1666 in 1/53
 Lambda= 0.134946
 statistics sampled from 35800 (35802) to 35800 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.79), E-opt: 0.2 (0.42), width:  16
 Scan time:  5.430

The best scores are:                                      opt bits E(85289)
NP_003011 (OMIM: 173120) neuroendocrine protein 7B ( 211) 1485 298.1 6.8e-81
NP_001138229 (OMIM: 173120) neuroendocrine protein ( 212) 1473 295.8 3.5e-80


>>NP_003011 (OMIM: 173120) neuroendocrine protein 7B2 is  (211 aa)
 initn: 1485 init1: 1485 opt: 1485  Z-score: 1573.3  bits: 298.1 E(85289): 6.8e-81
Smith-Waterman score: 1485; 100.0% identity (100.0% similar) in 211 aa overlap (1-211:1-211)

               10        20        30        40        50        60
pF1KB8 MVSRMVSTMLSGLLFWLASGWTPAFAYSPRTPDRVSEADIQRLLHGVMEQLGIARPRVEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MVSRMVSTMLSGLLFWLASGWTPAFAYSPRTPDRVSEADIQRLLHGVMEQLGIARPRVEY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PAHQAMNLVGPQSIEGGAHEGLQHLGPFGNIPNIVAELTGDNIPKDFSEDQGYPDPPNPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 PAHQAMNLVGPQSIEGGAHEGLQHLGPFGNIPNIVAELTGDNIPKDFSEDQGYPDPPNPC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PVGKTDDGCLENTPDTAEFSREFQLHQHLFDPEHDYPGLGKWNKKLLYEKMKGGERRKRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 PVGKTDDGCLENTPDTAEFSREFQLHQHLFDPEHDYPGLGKWNKKLLYEKMKGGERRKRR
              130       140       150       160       170       180

              190       200       210 
pF1KB8 SVNPYLQGQRLDNVVAKKSVPHFSDEDKDPE
       :::::::::::::::::::::::::::::::
NP_003 SVNPYLQGQRLDNVVAKKSVPHFSDEDKDPE
              190       200       210 

>>NP_001138229 (OMIM: 173120) neuroendocrine protein 7B2  (212 aa)
 initn: 1499 init1: 880 opt: 1473  Z-score: 1560.6  bits: 295.8 E(85289): 3.5e-80
Smith-Waterman score: 1473; 99.5% identity (99.5% similar) in 212 aa overlap (1-211:1-212)

               10        20        30        40        50        60
pF1KB8 MVSRMVSTMLSGLLFWLASGWTPAFAYSPRTPDRVSEADIQRLLHGVMEQLGIARPRVEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVSRMVSTMLSGLLFWLASGWTPAFAYSPRTPDRVSEADIQRLLHGVMEQLGIARPRVEY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PAHQAMNLVGPQSIEGGAHEGLQHLGPFGNIPNIVAELTGDNIPKDFSEDQGYPDPPNPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PAHQAMNLVGPQSIEGGAHEGLQHLGPFGNIPNIVAELTGDNIPKDFSEDQGYPDPPNPC
               70        80        90       100       110       120

               130       140       150       160       170         
pF1KB8 PVGKT-DDGCLENTPDTAEFSREFQLHQHLFDPEHDYPGLGKWNKKLLYEKMKGGERRKR
       ::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PVGKTADDGCLENTPDTAEFSREFQLHQHLFDPEHDYPGLGKWNKKLLYEKMKGGERRKR
              130       140       150       160       170       180

     180       190       200       210 
pF1KB8 RSVNPYLQGQRLDNVVAKKSVPHFSDEDKDPE
       ::::::::::::::::::::::::::::::::
NP_001 RSVNPYLQGQRLDNVVAKKSVPHFSDEDKDPE
              190       200       210  




211 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:48:26 2016 done: Fri Nov  4 10:48:27 2016
 Total Scan time:  5.430 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]