FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8231, 211 aa
  1>>>pF1KB8231 211 - 211 aa - 211 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5006+/-0.000641; mu= 14.0981+/- 0.039
 mean_var=84.0901+/-17.139, 0's: 0 Z-trim(113.0): 2  B-trim: 157 in 1/50
 Lambda= 0.139863
 statistics sampled from 13683 (13685) to 13683 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.79), E-opt: 0.2 (0.42), width:  16
 Scan time:  2.270

The best scores are:                                      opt bits E(32554)
CCDS45208.1 SCG5 gene_id:6447|Hs108|chr15          ( 211) 1485 308.4 2.1e-84
CCDS45207.1 SCG5 gene_id:6447|Hs108|chr15          ( 212) 1473 306.0 1.1e-83


>>CCDS45208.1 SCG5 gene_id:6447|Hs108|chr15               (211 aa)
 initn: 1485 init1: 1485 opt: 1485  Z-score: 1628.7  bits: 308.4 E(32554): 2.1e-84
Smith-Waterman score: 1485; 100.0% identity (100.0% similar) in 211 aa overlap (1-211:1-211)

               10        20        30        40        50        60
pF1KB8 MVSRMVSTMLSGLLFWLASGWTPAFAYSPRTPDRVSEADIQRLLHGVMEQLGIARPRVEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MVSRMVSTMLSGLLFWLASGWTPAFAYSPRTPDRVSEADIQRLLHGVMEQLGIARPRVEY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PAHQAMNLVGPQSIEGGAHEGLQHLGPFGNIPNIVAELTGDNIPKDFSEDQGYPDPPNPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PAHQAMNLVGPQSIEGGAHEGLQHLGPFGNIPNIVAELTGDNIPKDFSEDQGYPDPPNPC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PVGKTDDGCLENTPDTAEFSREFQLHQHLFDPEHDYPGLGKWNKKLLYEKMKGGERRKRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PVGKTDDGCLENTPDTAEFSREFQLHQHLFDPEHDYPGLGKWNKKLLYEKMKGGERRKRR
              130       140       150       160       170       180

              190       200       210 
pF1KB8 SVNPYLQGQRLDNVVAKKSVPHFSDEDKDPE
       :::::::::::::::::::::::::::::::
CCDS45 SVNPYLQGQRLDNVVAKKSVPHFSDEDKDPE
              190       200       210 

>>CCDS45207.1 SCG5 gene_id:6447|Hs108|chr15               (212 aa)
 initn: 1499 init1: 880 opt: 1473  Z-score: 1615.6  bits: 306.0 E(32554): 1.1e-83
Smith-Waterman score: 1473; 99.5% identity (99.5% similar) in 212 aa overlap (1-211:1-212)

               10        20        30        40        50        60
pF1KB8 MVSRMVSTMLSGLLFWLASGWTPAFAYSPRTPDRVSEADIQRLLHGVMEQLGIARPRVEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MVSRMVSTMLSGLLFWLASGWTPAFAYSPRTPDRVSEADIQRLLHGVMEQLGIARPRVEY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PAHQAMNLVGPQSIEGGAHEGLQHLGPFGNIPNIVAELTGDNIPKDFSEDQGYPDPPNPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PAHQAMNLVGPQSIEGGAHEGLQHLGPFGNIPNIVAELTGDNIPKDFSEDQGYPDPPNPC
               70        80        90       100       110       120

               130       140       150       160       170         
pF1KB8 PVGKT-DDGCLENTPDTAEFSREFQLHQHLFDPEHDYPGLGKWNKKLLYEKMKGGERRKR
       ::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PVGKTADDGCLENTPDTAEFSREFQLHQHLFDPEHDYPGLGKWNKKLLYEKMKGGERRKR
              130       140       150       160       170       180

     180       190       200       210 
pF1KB8 RSVNPYLQGQRLDNVVAKKSVPHFSDEDKDPE
       ::::::::::::::::::::::::::::::::
CCDS45 RSVNPYLQGQRLDNVVAKKSVPHFSDEDKDPE
              190       200       210  




211 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:48:25 2016 done: Fri Nov  4 10:48:26 2016
 Total Scan time:  2.270 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]