Result of FASTA (ccds) for
pF1KB8227
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8227, 185 aa
1>>>pF1KB8227 185 - 185 aa - 185 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.3342+/-0.000732; mu= 1.4889+/- 0.044
mean_var=192.3588+/-39.270, 0's: 0 Z-trim(116.8): 15 B-trim: 782 in 1/52
Lambda= 0.092474
statistics sampled from 17404 (17419) to 17404 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.834), E-opt: 0.2 (0.535), width: 16
Scan time: 1.450
The best scores are: opt bits E(32554)
CCDS14119.1 CD99 gene_id:4267|Hs108|chrY ( 185) 1248 177.3 4.8e-45
CCDS14119.1 CD99 gene_id:4267|Hs108|chrX ( 185) 1248 177.3 4.8e-45
CCDS83452.1 CD99 gene_id:4267|Hs108|chrX ( 184) 1231 175.0 2.3e-44
CCDS83452.1 CD99 gene_id:4267|Hs108|chrY ( 184) 1231 175.0 2.3e-44
CCDS75947.1 CD99 gene_id:4267|Hs108|chrX ( 160) 1077 154.4 3.1e-38
CCDS75947.1 CD99 gene_id:4267|Hs108|chrY ( 160) 1077 154.4 3.1e-38
CCDS48071.1 CD99 gene_id:4267|Hs108|chrX ( 169) 937 135.8 1.4e-32
CCDS48071.1 CD99 gene_id:4267|Hs108|chrY ( 169) 937 135.8 1.4e-32
>>CCDS14119.1 CD99 gene_id:4267|Hs108|chrY (185 aa)
initn: 1248 init1: 1248 opt: 1248 Z-score: 922.3 bits: 177.3 E(32554): 4.8e-45
Smith-Waterman score: 1248; 100.0% identity (100.0% similar) in 185 aa overlap (1-185:1-185)
10 20 30 40 50 60
pF1KB8 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
130 140 150 160 170 180
pF1KB8 TLLEK
:::::
CCDS14 TLLEK
>>CCDS14119.1 CD99 gene_id:4267|Hs108|chrX (185 aa)
initn: 1248 init1: 1248 opt: 1248 Z-score: 922.3 bits: 177.3 E(32554): 4.8e-45
Smith-Waterman score: 1248; 100.0% identity (100.0% similar) in 185 aa overlap (1-185:1-185)
10 20 30 40 50 60
pF1KB8 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
130 140 150 160 170 180
pF1KB8 TLLEK
:::::
CCDS14 TLLEK
>>CCDS83452.1 CD99 gene_id:4267|Hs108|chrX (184 aa)
initn: 1232 init1: 1078 opt: 1231 Z-score: 910.0 bits: 175.0 E(32554): 2.3e-44
Smith-Waterman score: 1231; 99.5% identity (99.5% similar) in 185 aa overlap (1-185:1-184)
10 20 30 40 50 60
pF1KB8 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
:::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::
CCDS83 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKEN-EQGEVDMESHRNANAEPAVQR
130 140 150 160 170
pF1KB8 TLLEK
:::::
CCDS83 TLLEK
180
>>CCDS83452.1 CD99 gene_id:4267|Hs108|chrY (184 aa)
initn: 1232 init1: 1078 opt: 1231 Z-score: 910.0 bits: 175.0 E(32554): 2.3e-44
Smith-Waterman score: 1231; 99.5% identity (99.5% similar) in 185 aa overlap (1-185:1-184)
10 20 30 40 50 60
pF1KB8 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
:::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::
CCDS83 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKEN-EQGEVDMESHRNANAEPAVQR
130 140 150 160 170
pF1KB8 TLLEK
:::::
CCDS83 TLLEK
180
>>CCDS75947.1 CD99 gene_id:4267|Hs108|chrX (160 aa)
initn: 1077 init1: 1077 opt: 1077 Z-score: 799.8 bits: 154.4 E(32554): 3.1e-38
Smith-Waterman score: 1077; 100.0% identity (100.0% similar) in 158 aa overlap (1-158:1-158)
10 20 30 40 50 60
pF1KB8 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
::::::::::::::::::::::::::::::::::::::
CCDS75 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENDG
130 140 150 160
pF1KB8 TLLEK
>>CCDS75947.1 CD99 gene_id:4267|Hs108|chrY (160 aa)
initn: 1077 init1: 1077 opt: 1077 Z-score: 799.8 bits: 154.4 E(32554): 3.1e-38
Smith-Waterman score: 1077; 100.0% identity (100.0% similar) in 158 aa overlap (1-158:1-158)
10 20 30 40 50 60
pF1KB8 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
::::::::::::::::::::::::::::::::::::::
CCDS75 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENDG
130 140 150 160
pF1KB8 TLLEK
>>CCDS48071.1 CD99 gene_id:4267|Hs108|chrX (169 aa)
initn: 932 init1: 932 opt: 937 Z-score: 698.6 bits: 135.8 E(32554): 1.4e-32
Smith-Waterman score: 1099; 91.4% identity (91.4% similar) in 185 aa overlap (1-185:1-169)
10 20 30 40 50 60
pF1KB8 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
::::::::::::::::::::::::::::::::: :::::::::::
CCDS48 MARGAALALLLFGLLGVLVAAPDGGFDLSDALP----------------GDDFDLGDAVV
10 20 30 40
70 80 90 100 110 120
pF1KB8 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB8 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
110 120 130 140 150 160
pF1KB8 TLLEK
:::::
CCDS48 TLLEK
>>CCDS48071.1 CD99 gene_id:4267|Hs108|chrY (169 aa)
initn: 932 init1: 932 opt: 937 Z-score: 698.6 bits: 135.8 E(32554): 1.4e-32
Smith-Waterman score: 1099; 91.4% identity (91.4% similar) in 185 aa overlap (1-185:1-169)
10 20 30 40 50 60
pF1KB8 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
::::::::::::::::::::::::::::::::: :::::::::::
CCDS48 MARGAALALLLFGLLGVLVAAPDGGFDLSDALP----------------GDDFDLGDAVV
10 20 30 40
70 80 90 100 110 120
pF1KB8 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB8 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
110 120 130 140 150 160
pF1KB8 TLLEK
:::::
CCDS48 TLLEK
185 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 10:44:59 2016 done: Fri Nov 4 10:45:00 2016
Total Scan time: 1.450 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]