Result of FASTA (ccds) for
pF1KB8221
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8221, 248 aa
1>>>pF1KB8221 248 - 248 aa - 248 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.1520+/-0.000723; mu= 8.7706+/- 0.044
mean_var=153.1611+/-30.873, 0's: 0 Z-trim(114.9): 8 B-trim: 157 in 1/52
Lambda= 0.103633
statistics sampled from 15462 (15470) to 15462 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.793), E-opt: 0.2 (0.475), width: 16
Scan time: 2.510
The best scores are: opt bits E(32554)
CCDS6601.1 CLTA gene_id:1211|Hs108|chr9 ( 248) 1675 261.0 5.3e-70
CCDS43802.1 CLTA gene_id:1211|Hs108|chr9 ( 236) 1221 193.1 1.4e-49
CCDS6600.1 CLTA gene_id:1211|Hs108|chr9 ( 218) 1127 179.1 2.2e-45
CCDS55306.1 CLTA gene_id:1211|Hs108|chr9 ( 230) 1094 174.1 7e-44
CCDS83364.1 CLTA gene_id:1211|Hs108|chr9 ( 196) 833 135.1 3.5e-32
CCDS4403.1 CLTB gene_id:1212|Hs108|chr5 ( 229) 648 107.5 8.3e-24
CCDS4402.1 CLTB gene_id:1212|Hs108|chr5 ( 211) 581 97.4 8.1e-21
CCDS55307.1 CLTA gene_id:1211|Hs108|chr9 ( 166) 532 90.0 1.1e-18
>>CCDS6601.1 CLTA gene_id:1211|Hs108|chr9 (248 aa)
initn: 1675 init1: 1675 opt: 1675 Z-score: 1370.3 bits: 261.0 E(32554): 5.3e-70
Smith-Waterman score: 1675; 100.0% identity (100.0% similar) in 248 aa overlap (1-248:1-248)
10 20 30 40 50 60
pF1KB8 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 TNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 TNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
190 200 210 220 230 240
pF1KB8 LKQAPLVH
::::::::
CCDS66 LKQAPLVH
>>CCDS43802.1 CLTA gene_id:1211|Hs108|chr9 (236 aa)
initn: 1573 init1: 1221 opt: 1221 Z-score: 1003.7 bits: 193.1 E(32554): 1.4e-49
Smith-Waterman score: 1553; 95.2% identity (95.2% similar) in 248 aa overlap (1-248:1-236)
10 20 30 40 50 60
pF1KB8 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 TNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ------------AAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
190 200 210 220
pF1KB8 LKQAPLVH
::::::::
CCDS43 LKQAPLVH
230
>>CCDS6600.1 CLTA gene_id:1211|Hs108|chr9 (218 aa)
initn: 1127 init1: 1127 opt: 1127 Z-score: 928.2 bits: 179.1 E(32554): 2.2e-45
Smith-Waterman score: 1397; 87.9% identity (87.9% similar) in 248 aa overlap (1-248:1-218)
10 20 30 40 50 60
pF1KB8 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV
::::::::::::::::::::::::::::::::::::::::::
CCDS66 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------
130 140 150 160
190 200 210 220 230 240
pF1KB8 TNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 ------------AAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
170 180 190 200 210
pF1KB8 LKQAPLVH
::::::::
CCDS66 LKQAPLVH
>>CCDS55306.1 CLTA gene_id:1211|Hs108|chr9 (230 aa)
initn: 1534 init1: 1094 opt: 1094 Z-score: 901.3 bits: 174.1 E(32554): 7e-44
Smith-Waterman score: 1501; 92.3% identity (92.3% similar) in 248 aa overlap (1-248:1-230)
10 20 30 40 50 60
pF1KB8 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV
:::::::::::::::::::::::::::::::::::::::::
CCDS55 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNS------------------
130 140 150 160
190 200 210 220 230 240
pF1KB8 TNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
170 180 190 200 210 220
pF1KB8 LKQAPLVH
::::::::
CCDS55 LKQAPLVH
230
>>CCDS83364.1 CLTA gene_id:1211|Hs108|chr9 (196 aa)
initn: 826 init1: 826 opt: 833 Z-score: 691.3 bits: 135.1 E(32554): 3.5e-32
Smith-Waterman score: 1218; 79.0% identity (79.0% similar) in 248 aa overlap (1-248:1-196)
10 20 30 40 50 60
pF1KB8 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER
::::::::::::
CCDS83 GPQPHGEPPGGP------------------------------------------------
70
130 140 150 160 170 180
pF1KB8 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 ----DANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV
80 90 100 110 120
190 200 210 220 230 240
pF1KB8 TNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 TNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
130 140 150 160 170 180
pF1KB8 LKQAPLVH
::::::::
CCDS83 LKQAPLVH
190
>>CCDS4403.1 CLTB gene_id:1212|Hs108|chr5 (229 aa)
initn: 677 init1: 490 opt: 648 Z-score: 540.9 bits: 107.5 E(32554): 8.3e-24
Smith-Waterman score: 893; 61.2% identity (79.3% similar) in 227 aa overlap (21-246:13-227)
10 20 30 40 50 60
pF1KB8 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP
.:. :.:::::::::::::::::::::::.:. :.
CCDS44 MADDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHA
10 20 30 40 50
70 80 90 100 110
pF1KB8 GPQPHGEPPG-GPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQME
.: : : : . . ..::. .::.:::.:.::::.:.::: .:::::::::::: .
CCDS44 APAQPGPTSGAGSEDMGTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 RLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGY
::. ::: :. : ::.::: :.:::: ::.::..:.: :::.::.:::.:: ::.:::
CCDS44 RLQELDAASKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADIIGY
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 VTNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLI
: :.:::::.. : .::::::.::.::::::::::: :::::.::::.
CCDS44 V------------ASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLM
180 190 200 210 220
240
pF1KB8 SLKQAPLVH
::::.::
CCDS44 SLKQTPLSR
>>CCDS4402.1 CLTB gene_id:1212|Hs108|chr5 (211 aa)
initn: 625 init1: 422 opt: 581 Z-score: 487.2 bits: 97.4 E(32554): 8.1e-21
Smith-Waterman score: 761; 55.5% identity (71.8% similar) in 227 aa overlap (21-246:13-209)
10 20 30 40 50 60
pF1KB8 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP
.:. :.:::::::::::::::::::::::.:. :.
CCDS44 MADDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHA
10 20 30 40 50
70 80 90 100 110
pF1KB8 GPQPHGEPPG-GPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQME
.: : : : . . ..::. .::.:::.:.::::.:.::: .:::::::::::: .
CCDS44 APAQPGPTSGAGSEDMGTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 RLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGY
::. ::: :. : ::.::: :.:::: ::.::..:.: :::
CCDS44 RLQELDAASKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNR-----------------
120 130 140 150
180 190 200 210 220 230
pF1KB8 VTNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLI
:.:::::.. : .::::::.::.::::::::::: :::::.::::.
CCDS44 -------------ASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLM
160 170 180 190 200
240
pF1KB8 SLKQAPLVH
::::.::
CCDS44 SLKQTPLSR
210
>>CCDS55307.1 CLTA gene_id:1211|Hs108|chr9 (166 aa)
initn: 872 init1: 519 opt: 532 Z-score: 449.0 bits: 90.0 E(32554): 1.1e-18
Smith-Waterman score: 940; 66.9% identity (66.9% similar) in 248 aa overlap (1-248:1-166)
10 20 30 40 50 60
pF1KB8 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER
::::::::::::
CCDS55 GPQPHGEPPGGP------------------------------------------------
70
130 140 150 160 170 180
pF1KB8 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV
::::::::::::::::::::::::::::::::::::::
CCDS55 ----DANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------
80 90 100 110
190 200 210 220 230 240
pF1KB8 TNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ------------AAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
120 130 140 150
pF1KB8 LKQAPLVH
::::::::
CCDS55 LKQAPLVH
160
248 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 10:41:44 2016 done: Fri Nov 4 10:41:44 2016
Total Scan time: 2.510 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]