FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8219, 317 aa
  1>>>pF1KB8219 317 - 317 aa - 317 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2178+/-0.000857; mu= 11.4350+/- 0.052
 mean_var=73.1401+/-14.598, 0's: 0 Z-trim(107.2): 13  B-trim: 0 in 0/51
 Lambda= 0.149967
 statistics sampled from 9398 (9404) to 9398 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.644), E-opt: 0.2 (0.289), width:  16
 Scan time:  1.850

The best scores are:                                      opt bits E(32554)
CCDS9193.1 RPLP0 gene_id:6175|Hs108|chr12          ( 317) 2027 447.6  6e-126


>>CCDS9193.1 RPLP0 gene_id:6175|Hs108|chr12               (317 aa)
 initn: 2027 init1: 2027 opt: 2027  Z-score: 2374.6  bits: 447.6 E(32554): 6e-126
Smith-Waterman score: 2027; 100.0% identity (100.0% similar) in 317 aa overlap (1-317:1-317)

               10        20        30        40        50        60
pF1KB8 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 SPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 SPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPAKVEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPAKVEA
              250       260       270       280       290       300

              310       
pF1KB8 KEESEESDEDMGFGLFD
       :::::::::::::::::
CCDS91 KEESEESDEDMGFGLFD
              310       




317 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:40:17 2016 done: Fri Nov  4 10:40:18 2016
 Total Scan time:  1.850 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]