Result of FASTA (ccds) for
pF1KB8211
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8211, 363 aa
1>>>pF1KB8211 363 - 363 aa - 363 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 12.0253+/-0.00107; mu= -10.5995+/- 0.064
mean_var=520.7347+/-107.064, 0's: 0 Z-trim(117.0): 60 B-trim: 0 in 0/53
Lambda= 0.056204
statistics sampled from 17628 (17686) to 17628 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.816), E-opt: 0.2 (0.543), width: 16
Scan time: 2.190
The best scores are: opt bits E(32554)
CCDS32960.1 SSBP4 gene_id:170463|Hs108|chr19 ( 363) 2596 224.3 1.3e-58
CCDS30726.1 SSBP3 gene_id:23648|Hs108|chr1 ( 361) 1985 174.8 1e-43
CCDS4056.1 SSBP2 gene_id:23635|Hs108|chr5 ( 361) 1966 173.2 3e-43
CCDS75268.1 SSBP2 gene_id:23635|Hs108|chr5 ( 369) 1944 171.5 1.1e-42
CCDS590.1 SSBP3 gene_id:23648|Hs108|chr1 ( 368) 1871 165.5 6.4e-41
CCDS12378.1 SSBP4 gene_id:170463|Hs108|chr19 ( 385) 1757 156.3 4e-38
CCDS591.1 SSBP3 gene_id:23648|Hs108|chr1 ( 388) 1270 116.8 3.1e-26
CCDS58961.1 SSBP2 gene_id:23635|Hs108|chr5 ( 331) 1239 114.3 1.6e-25
CCDS58960.1 SSBP2 gene_id:23635|Hs108|chr5 ( 298) 1061 99.8 3.3e-21
CCDS58963.1 SSBP2 gene_id:23635|Hs108|chr5 ( 341) 888 85.8 6e-17
CCDS58962.1 SSBP2 gene_id:23635|Hs108|chr5 ( 339) 744 74.1 1.9e-13
>>CCDS32960.1 SSBP4 gene_id:170463|Hs108|chr19 (363 aa)
initn: 2596 init1: 2596 opt: 2596 Z-score: 1166.0 bits: 224.3 E(32554): 1.3e-58
Smith-Waterman score: 2596; 100.0% identity (100.0% similar) in 363 aa overlap (1-363:1-363)
10 20 30 40 50 60
pF1KB8 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 FFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 PRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 GPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAME
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 PHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPGMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPGMT
310 320 330 340 350 360
pF1KB8 MSV
:::
CCDS32 MSV
>>CCDS30726.1 SSBP3 gene_id:23648|Hs108|chr1 (361 aa)
initn: 1945 init1: 1055 opt: 1985 Z-score: 898.2 bits: 174.8 E(32554): 1e-43
Smith-Waterman score: 1985; 73.0% identity (91.8% similar) in 366 aa overlap (1-363:1-361)
10 20 30 40 50 60
pF1KB8 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL
:.::: ::::::::.::::::::::::::::.::::::::::::::::::::::::::::
CCDS30 MFAKG-KGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFL
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG
:::::::::::::::.::..::::.:::::.:::::::::::.:.. :.: : .: . :
CCDS30 HSWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPG
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 FFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTP
:::::::::. ::::: .:: .:::.:.::.:::::..:.:. : ::::.::: :::..:
CCDS30 FFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPT-RQQGHPNMGGSMQRMNP
120 130 140 150 160 170
190 200 210 220 230
pF1KB8 PRGMASVGP--QSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASP-SGNSIPYSSSSPG
::::. .:: :.::.::::::::: ::..:..:::::. :: .: :.:::::::::::
CCDS30 PRGMGPMGPGPQNYGSGMRPPPNSL-GPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPG
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 SYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMS
.:.:::::::::::::::::.::::::.:.::..::. :..:.:::.::: .:::..:.
CCDS30 TYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMG
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB8 AMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSP
.:::::.::::::::.:::::.::. ..:.:: :::::::::. .:.::: : ...:::
CCDS30 GMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGEL--GGNFLHSFQNDNYSP
300 310 320 330 340 350
360
pF1KB8 GMTMSV
.:::::
CCDS30 SMTMSV
360
>>CCDS4056.1 SSBP2 gene_id:23635|Hs108|chr5 (361 aa)
initn: 1846 init1: 1390 opt: 1966 Z-score: 889.9 bits: 173.2 E(32554): 3e-43
Smith-Waterman score: 1966; 73.7% identity (91.0% similar) in 365 aa overlap (1-363:1-361)
10 20 30 40 50
pF1KB8 MYAKG-GKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGF
::.:: ...:::::::::::::::::::::::.:::::::::::::::::::::::::::
CCDS40 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 LHSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAA
::::::::::::::::.:::.::::.:::::.:::::::::::.:.. ::: : .: .
CCDS40 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 GFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVT
::::::::::.:::::: ::.:.: .:.::::::::..:.:. : ::::.:::::::.:
CCDS40 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPT-RQQGHPNMGGPMQRMT
130 140 150 160 170
180 190 200 210 220 230
pF1KB8 PPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSG-NSIPYSSSSPGS
:::::. .:::.:::.:::: :.:.:::.:.:::::: :: .:.. :::::::.:::.
CCDS40 PPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGN
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 YTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSA
:.:::::::::::::::::.:::::..::::.:: . : .: :::.::: .:::.....
CCDS40 YVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGG
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB8 MEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPG
:: ::.::::::::::.. :.::. .. ::: :::::::::: .:.::.:: ::::::.
CCDS40 MESHHMNGSLGSGDMDSISKNSPNNMS-LSNQPGTPRDDGEM--GGNFLNPFQSESYSPS
300 310 320 330 340 350
360
pF1KB8 MTMSV
:::::
CCDS40 MTMSV
360
>>CCDS75268.1 SSBP2 gene_id:23635|Hs108|chr5 (369 aa)
initn: 1753 init1: 934 opt: 1944 Z-score: 880.2 bits: 171.5 E(32554): 1.1e-42
Smith-Waterman score: 1944; 72.4% identity (89.0% similar) in 373 aa overlap (1-363:1-369)
10 20 30 40 50
pF1KB8 MYAKG-GKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGF
::.:: ...:::::::::::::::::::::::.:::::::::::::::::::::::::::
CCDS75 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 LHSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAA
::::::::::::::::.:::.::::.:::::.:::::::::::.:.. ::: : .: .
CCDS75 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 GFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVT
::::::::::.:::::: ::.:.: .:.::::::::..:.:. : ::::.:::::::.:
CCDS75 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPT-RQQGHPNMGGPMQRMT
130 140 150 160 170
180 190 200 210 220 230
pF1KB8 PPRGMASVGPQS--------YGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSG-NSIP
:::::. .:::: :::.:::: :.:.:::.:.:::::: :: .:.. ::::
CCDS75 PPRGMVPLGPQSDPWLSLQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIP
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 YSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPE
:::.:::.:.:::::::::::::::::.:::::..::::.:: . : .: :::.::: .
CCDS75 YSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSD
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB8 GPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPF
:::.....:: ::.::::::::::.. :.::. .. ::: :::::::::: .:.::.::
CCDS75 GPMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMS-LSNQPGTPRDDGEM--GGNFLNPF
300 310 320 330 340 350
360
pF1KB8 PSESYSPGMTMSV
::::::.:::::
CCDS75 QSESYSPSMTMSV
360
>>CCDS590.1 SSBP3 gene_id:23648|Hs108|chr1 (368 aa)
initn: 1797 init1: 739 opt: 1871 Z-score: 848.2 bits: 165.5 E(32554): 6.4e-41
Smith-Waterman score: 1871; 69.7% identity (88.5% similar) in 373 aa overlap (1-363:1-368)
10 20 30 40 50 60
pF1KB8 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL
:.::: ::::::::.::::::::::::::::.::::::::::::::::::::::::::::
CCDS59 MFAKG-KGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFL
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG
:::::::::::::::.::..::::.:::::.:::::::::::.:.. :.: : .: . :
CCDS59 HSWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPG
60 70 80 90 100 110
130 140 150 160 170
pF1KB8 FFQ--PFMSPRFPGGPRP----TLRMP-SQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGG
::: : .: . : : .. : ::::.:.::.:::::..:.:. : ::::.:::
CCDS59 FFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPPGGVPGTQPLLPNSMDPT-RQQGHPNMGG
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 PMQRVTPPRGMASVGP--QSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASP-SGNSIP
:::..:::::. .:: :.::.::::::::: ::..:..:::::. :: .: :.::::
CCDS59 SMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSL-GPAMPGINMGPGAGRPWPNPNSANSIP
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 YSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPE
:::::::.:.:::::::::::::::::.::::::.:.::..::. :..:.:::.::: .
CCDS59 YSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSD
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB8 GPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPF
:::..:..:::::.::::::::.:::::.::. ..:.:: :::::::::. .:.::: :
CCDS59 GPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGEL--GGNFLHSF
300 310 320 330 340 350
360
pF1KB8 PSESYSPGMTMSV
...:::.:::::
CCDS59 QNDNYSPSMTMSV
360
>>CCDS12378.1 SSBP4 gene_id:170463|Hs108|chr19 (385 aa)
initn: 1747 init1: 1747 opt: 1757 Z-score: 798.0 bits: 156.3 E(32554): 4e-38
Smith-Waterman score: 2542; 94.3% identity (94.3% similar) in 385 aa overlap (1-363:1-385)
10 20 30 40 50 60
pF1KB8 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG
70 80 90 100 110 120
130 140 150
pF1KB8 FFQ----------------------PFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGA
::: :::::::::::::::::::::::::::::::::::
CCDS12 FFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGA
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB8 MEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVR
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB8 GPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGA
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB8 GRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDG
310 320 330 340 350 360
340 350 360
pF1KB8 EMAAAGTFLHPFPSESYSPGMTMSV
:::::::::::::::::::::::::
CCDS12 EMAAAGTFLHPFPSESYSPGMTMSV
370 380
>>CCDS591.1 SSBP3 gene_id:23648|Hs108|chr1 (388 aa)
initn: 1911 init1: 739 opt: 1270 Z-score: 584.5 bits: 116.8 E(32554): 3.1e-26
Smith-Waterman score: 1921; 67.9% identity (85.5% similar) in 393 aa overlap (1-363:1-388)
10 20 30 40 50 60
pF1KB8 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL
:.::: ::::::::.::::::::::::::::.::::::::::::::::::::::::::::
CCDS59 MFAKG-KGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFL
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG
:::::::::::::::.::..::::.:::::.:::::::::::.:.. :.: : .: . :
CCDS59 HSWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPG
60 70 80 90 100 110
130 140 150
pF1KB8 FFQ---------------------------PFMSPRFPGGPRPTLRMPSQPPAGLPGSQP
::: ::::::. ::::: .:: .:::.:.::.::
CCDS59 FFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQP
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB8 LLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGP--QSYGGGMRPPPNSLAGPGLPAM
:::..:.:. : ::::.::: :::..:::::. .:: :.::.::::::::: ::..:..
CCDS59 LLPNSMDPT-RQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSL-GPAMPGI
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB8 NMGPGVRGPWASP-SGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTI
:::::. :: .: :.:::::::::::.:.:::::::::::::::::.::::::.:.::.
CCDS59 NMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTM
240 250 260 270 280 290
280 290 300 310 320 330
pF1KB8 MNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNA
.::. :..:.:::.::: .:::..:..:::::.::::::::.:::::.::. ..:.::
CCDS59 INPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNP
300 310 320 330 340 350
340 350 360
pF1KB8 PGTPRDDGEMAAAGTFLHPFPSESYSPGMTMSV
:::::::::. .:.::: : ...:::.:::::
CCDS59 PGTPRDDGEL--GGNFLHSFQNDNYSPSMTMSV
360 370 380
>>CCDS58961.1 SSBP2 gene_id:23635|Hs108|chr5 (331 aa)
initn: 1697 init1: 676 opt: 1239 Z-score: 571.8 bits: 114.3 E(32554): 1.6e-25
Smith-Waterman score: 1761; 68.5% identity (84.4% similar) in 365 aa overlap (1-363:1-331)
10 20 30 40 50
pF1KB8 MYAKG-GKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGF
::.:: ...:::::::::::::::::::::::.:::::::::::::::::::::::::::
CCDS58 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 LHSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAA
::::::::::::::::.:::.::::.:::::.::
CCDS58 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDY--------------------------
70 80 90
120 130 140 150 160 170
pF1KB8 GFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVT
::::::.:::::: ::.:.: .:.::::::::..:.:. : ::::.:::::::.:
CCDS58 ----PFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPT-RQQGHPNMGGPMQRMT
100 110 120 130 140
180 190 200 210 220 230
pF1KB8 PPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSG-NSIPYSSSSPGS
:::::. .:::.:::.:::: :.:.:::.:.:::::: :: .:.. :::::::.:::.
CCDS58 PPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGN
150 160 170 180 190 200
240 250 260 270 280 290
pF1KB8 YTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSA
:.:::::::::::::::::.:::::..::::.:: . : .: :::.::: .:::.....
CCDS58 YVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGG
210 220 230 240 250 260
300 310 320 330 340 350
pF1KB8 MEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPG
:: ::.::::::::::.. :.::. .. ::: :::::::::: .:.::.:: ::::::.
CCDS58 MESHHMNGSLGSGDMDSISKNSPNNMS-LSNQPGTPRDDGEM--GGNFLNPFQSESYSPS
270 280 290 300 310 320
360
pF1KB8 MTMSV
:::::
CCDS58 MTMSV
330
>>CCDS58960.1 SSBP2 gene_id:23635|Hs108|chr5 (298 aa)
initn: 1237 init1: 672 opt: 1061 Z-score: 494.3 bits: 99.8 E(32554): 3.3e-21
Smith-Waterman score: 1583; 68.4% identity (83.9% similar) in 323 aa overlap (1-321:1-292)
10 20 30 40 50
pF1KB8 MYAKG-GKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGF
::.:: ...:::::::::::::::::::::::.:::::::::::::::::::::::::::
CCDS58 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 LHSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAA
::::::::::::::::.:::.::::.:::::.::
CCDS58 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDY--------------------------
70 80 90
120 130 140 150 160 170
pF1KB8 GFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVT
::::::.:::::: ::.:.: .:.::::::::..:.:. : ::::.:::::::.:
CCDS58 ----PFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPT-RQQGHPNMGGPMQRMT
100 110 120 130 140
180 190 200 210 220 230
pF1KB8 PPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSG-NSIPYSSSSPGS
:::::. .:::.:::.:::: :.:.:::.:.:::::: :: .:.. :::::::.:::.
CCDS58 PPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGN
150 160 170 180 190 200
240 250 260 270 280 290
pF1KB8 YTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSA
:.:::::::::::::::::.:::::..::::.:: . : .: :::.::: .:::.....
CCDS58 YVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGG
210 220 230 240 250 260
300 310 320 330 340 350
pF1KB8 MEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPG
:: ::.::::::::::.. : ::
CCDS58 MESHHMNGSLGSGDMDSISKYSPSMTMSV
270 280 290
>>CCDS58963.1 SSBP2 gene_id:23635|Hs108|chr5 (341 aa)
initn: 1693 init1: 714 opt: 888 Z-score: 417.8 bits: 85.8 E(32554): 6e-17
Smith-Waterman score: 1786; 69.3% identity (86.0% similar) in 365 aa overlap (1-363:1-341)
10 20 30 40 50
pF1KB8 MYAKG-GKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGF
::.:: ...:::::::::::::::::::::::.:::::::::::::::::::::::::::
CCDS58 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 LHSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAA
::::::::::::::::.:::.::::.:::::.:::::::::::.:.. ::: : .: .
CCDS58 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 GFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVT
:::: . .:.::::::::..:.:. : ::::.:::::::.:
CCDS58 GFFQAL--------------------GGVPGSQPLLPSGMDPT-RQQGHPNMGGPMQRMT
130 140 150
180 190 200 210 220 230
pF1KB8 PPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSG-NSIPYSSSSPGS
:::::. .:::.:::.:::: :.:.:::.:.:::::: :: .:.. :::::::.:::.
CCDS58 PPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGN
160 170 180 190 200 210
240 250 260 270 280 290
pF1KB8 YTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSA
:.:::::::::::::::::.:::::..::::.:: . : .: :::.::: .:::.....
CCDS58 YVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGG
220 230 240 250 260 270
300 310 320 330 340 350
pF1KB8 MEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPG
:: ::.::::::::::.. :.::. .. ::: :::::::::: .:.::.:: ::::::.
CCDS58 MESHHMNGSLGSGDMDSISKNSPNNMS-LSNQPGTPRDDGEM--GGNFLNPFQSESYSPS
280 290 300 310 320 330
360
pF1KB8 MTMSV
:::::
CCDS58 MTMSV
340
363 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 10:36:42 2016 done: Fri Nov 4 10:36:43 2016
Total Scan time: 2.190 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]