FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8206, 269 aa
  1>>>pF1KB8206 269 - 269 aa - 269 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4159+/-0.000685; mu= 7.8631+/- 0.041
 mean_var=167.5061+/-34.142, 0's: 0 Z-trim(117.7): 8  B-trim: 448 in 1/50
 Lambda= 0.099097
 statistics sampled from 18434 (18442) to 18434 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.854), E-opt: 0.2 (0.567), width:  16
 Scan time:  2.030

The best scores are:                                      opt bits E(32554)
CCDS1943.1 WBP1 gene_id:23559|Hs108|chr2           ( 269) 1962 291.2   5e-79
CCDS44473.1 WBP1L gene_id:54838|Hs108|chr10        ( 363)  578 93.5 2.3e-19
CCDS7540.1 WBP1L gene_id:54838|Hs108|chr10         ( 342)  570 92.3 4.8e-19


>>CCDS1943.1 WBP1 gene_id:23559|Hs108|chr2                (269 aa)
 initn: 1962 init1: 1962 opt: 1962  Z-score: 1532.2  bits: 291.2 E(32554): 5e-79
Smith-Waterman score: 1962; 100.0% identity (100.0% similar) in 269 aa overlap (1-269:1-269)

               10        20        30        40        50        60
pF1KB8 MARASSGNGSEEAWGALRAPQQQLRELCPGVNNQPYLCESGHCCGETGCCTYYYELWWFW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 MARASSGNGSEEAWGALRAPQQQLRELCPGVNNQPYLCESGHCCGETGCCTYYYELWWFW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LLWTVLILFSCCCAFRHRRAKLRLQQQQRQREINLLAYHGACHGAGPFPTGSLLDLRFLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 LLWTVLILFSCCCAFRHRRAKLRLQQQQRQREINLLAYHGACHGAGPFPTGSLLDLRFLS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 TFKPPAYEDVVHRPGTPPPPYTVAPGRPLTASSEQTCCSSSSSCPAHFEGTNVEGVSSHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 TFKPPAYEDVVHRPGTPPPPYTVAPGRPLTASSEQTCCSSSSSCPAHFEGTNVEGVSSHQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 SAPPHQEGEPGAGVTPASTPPSCRYRRLTGDSGIELCPCPASGEGEPVKEVRVSATLPDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 SAPPHQEGEPGAGVTPASTPPSCRYRRLTGDSGIELCPCPASGEGEPVKEVRVSATLPDL
              190       200       210       220       230       240

              250       260         
pF1KB8 EDYSPCALPPESVPQIFPMGLSSSEGDIP
       :::::::::::::::::::::::::::::
CCDS19 EDYSPCALPPESVPQIFPMGLSSSEGDIP
              250       260         

>>CCDS44473.1 WBP1L gene_id:54838|Hs108|chr10             (363 aa)
 initn: 702 init1: 452 opt: 578  Z-score: 461.2  bits: 93.5 E(32554): 2.3e-19
Smith-Waterman score: 584; 37.8% identity (56.7% similar) in 270 aa overlap (18-230:25-289)

                      10        20        30        40        50   
pF1KB8        MARASSGNGSEEAWGALRAPQQQLRELCPGVNNQPYLCESGHCCGETGCCTYY
                               ::   : .: : :.::: :.:..:::::.. ::.::
CCDS44 MERRRLLGGMALLLLQALPSPLSARAEPPQDKEACVGTNNQSYICDTGHCCGQSQCCNYY
               10        20        30        40        50        60

            60        70        80        90       100       110   
pF1KB8 YELWWFWLLWTVLILFSCCCAFRHRRAKLRLQQQQRQREINLLAYHGACHGAGPFPTGSL
       ::::::::.::..:..::::. .::::: ::: ::::.::::.::. : :. . .:    
CCDS44 YELWWFWLVWTIIIILSCCCVCHHRRAKHRLQAQQRQHEINLIAYREA-HNYSALP----
               70        80        90       100        110         

           120       130       140                                 
pF1KB8 LDLRFLSTFKPPAYEDVVHRPGTPPPPYT-----------------------VAPGR---
       . .::: ..  : ::.::.:: ::::::.                       . : :   
CCDS44 FYFRFLPNYLLPPYEEVVNRPPTPPPPYSAFQLQQQQLLPPQCGPAGGSPPGIDPTRGSQ
         120       130       140       150       160       170     

            150       160             170       180       190      
pF1KB8 -----PLTASSEQTCCSSS------SSCPAHFEGTNVEGVSSHQSAPPHQEGEPGA----
            ::.  :...    :      :. :.   .:.. :.    :.    : .:::    
CCDS44 GAQSSPLSEPSRSSTRPPSIADPDPSDLPVDRAATKAPGMEPSGSVAGLGELDPGAFLDK
         180       190       200       210       220       230     

                            200       210       220       230      
pF1KB8 ----------------GVTPASTPPSCRYRRLTGDSGIELCPCPASGEGEPVKEVRVSAT
                       :.  ..     :.::.:::::::.: :  . . . .::      
CCDS44 DAECREELLKDDSSEHGAPDSKEKTPGRHRRFTGDSGIEVCVCNRGHHDDDLKEFNTLID
         240       250       260       270       280       290     

        240       250       260                                    
pF1KB8 LPDLEDYSPCALPPESVPQIFPMGLSSSEGDIP                           
                                                                   
CCDS44 DALDGPLDFCDSCHVRPPGDEEEGLCQSSEEQAREPGHPHLPRPPACLLLNTINEQDSPN
         300       310       320       330       340       350     

>>CCDS7540.1 WBP1L gene_id:54838|Hs108|chr10              (342 aa)
 initn: 665 init1: 415 opt: 570  Z-score: 455.3  bits: 92.3 E(32554): 4.8e-19
Smith-Waterman score: 576; 37.6% identity (57.1% similar) in 266 aa overlap (22-230:8-268)

               10        20        30        40        50        60
pF1KB8 MARASSGNGSEEAWGALRAPQQQLRELCPGVNNQPYLCESGHCCGETGCCTYYYELWWFW
                            .: .: : :.::: :.:..:::::.. ::.:::::::::
CCDS75               MPFLLGLRQDKEACVGTNNQSYICDTGHCCGQSQCCNYYYELWWFW
                             10        20        30        40      

               70        80        90       100       110       120
pF1KB8 LLWTVLILFSCCCAFRHRRAKLRLQQQQRQREINLLAYHGACHGAGPFPTGSLLDLRFLS
       :.::..:..::::. .::::: ::: ::::.::::.::. : :. . .:    . .::: 
CCDS75 LVWTIIIILSCCCVCHHRRAKHRLQAQQRQHEINLIAYREA-HNYSALP----FYFRFLP
         50        60        70        80         90           100 

              130       140                                        
pF1KB8 TFKPPAYEDVVHRPGTPPPPYT-----------------------VAPGR--------PL
       ..  : ::.::.:: ::::::.                       . : :        ::
CCDS75 NYLLPPYEEVVNRPPTPPPPYSAFQLQQQQLLPPQCGPAGGSPPGIDPTRGSQGAQSSPL
             110       120       130       140       150       160 

     150       160             170       180       190             
pF1KB8 TASSEQTCCSSS------SSCPAHFEGTNVEGVSSHQSAPPHQEGEPGA-----------
       .  :...    :      :. :.   .:.. :.    :.    : .:::           
CCDS75 SEPSRSSTRPPSIADPDPSDLPVDRAATKAPGMEPSGSVAGLGELDPGAFLDKDAECREE
             170       180       190       200       210       220 

                     200       210       220       230       240   
pF1KB8 ---------GVTPASTPPSCRYRRLTGDSGIELCPCPASGEGEPVKEVRVSATLPDLEDY
                :.  ..     :.::.:::::::.: :  . . . .::             
CCDS75 LLKDDSSEHGAPDSKEKTPGRHRRFTGDSGIEVCVCNRGHHDDDLKEFNTLIDDALDGPL
             230       240       250       260       270       280 

           250       260                                           
pF1KB8 SPCALPPESVPQIFPMGLSSSEGDIP                                  
                                                                   
CCDS75 DFCDSCHVRPPGDEEEGLCQSSEEQAREPGHPHLPRPPACLLLNTINEQDSPNSQSSSSP
             290       300       310       320       330       340 




269 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:33:00 2016 done: Fri Nov  4 10:33:01 2016
 Total Scan time:  2.030 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]