FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8203, 303 aa
  1>>>pF1KB8203 303 - 303 aa - 303 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3937+/-0.000813; mu= 11.2078+/- 0.049
 mean_var=109.3576+/-21.613, 0's: 0 Z-trim(110.4): 58  B-trim: 10 in 1/49
 Lambda= 0.122645
 statistics sampled from 11553 (11610) to 11553 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.72), E-opt: 0.2 (0.357), width:  16
 Scan time:  2.680

The best scores are:                                      opt bits E(32554)
CCDS10419.1 STUB1 gene_id:10273|Hs108|chr16        ( 303) 2043 371.8 3.5e-103
CCDS76797.1 STUB1 gene_id:10273|Hs108|chr16        ( 231) 1561 286.5 1.3e-77


>>CCDS10419.1 STUB1 gene_id:10273|Hs108|chr16             (303 aa)
 initn: 2043 init1: 2043 opt: 2043  Z-score: 1966.0  bits: 371.8 E(32554): 3.5e-103
Smith-Waterman score: 2043; 100.0% identity (100.0% similar) in 303 aa overlap (1-303:1-303)

               10        20        30        40        50        60
pF1KB8 MKGKEEKEGGARLGAGGGSPEKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MKGKEEKEGGARLGAGGGSPEKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 VYYTNRALCYLKMQQHEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VYYTNRALCYLKMQQHEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 YSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLSRLIAAERERELEEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 YSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLSRLIAAERERELEEC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 QRNHEGDEDDSHVRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QRNHEGDEDDSHVRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 REPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQEQLIPNLAMKEVIDAFISENGWV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 REPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQEQLIPNLAMKEVIDAFISENGWV
              250       260       270       280       290       300

          
pF1KB8 EDY
       :::
CCDS10 EDY
          

>>CCDS76797.1 STUB1 gene_id:10273|Hs108|chr16             (231 aa)
 initn: 1561 init1: 1561 opt: 1561  Z-score: 1506.8  bits: 286.5 E(32554): 1.3e-77
Smith-Waterman score: 1561; 100.0% identity (100.0% similar) in 231 aa overlap (73-303:1-231)

             50        60        70        80        90       100  
pF1KB8 PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQHEQALADCRRALELDGQSVKAHFFLGQ
                                     ::::::::::::::::::::::::::::::
CCDS76                               MQQHEQALADCRRALELDGQSVKAHFFLGQ
                                             10        20        30

            110       120       130       140       150       160  
pF1KB8 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELH
               40        50        60        70        80        90

            170       180       190       200       210       220  
pF1KB8 SYLSRLIAAERERELEECQRNHEGDEDDSHVRAQQACIEAKHDKYMADMDELFSQVDEKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 SYLSRLIAAERERELEECQRNHEGDEDDSHVRAQQACIEAKHDKYMADMDELFSQVDEKR
              100       110       120       130       140       150

            230       240       250       260       270       280  
pF1KB8 KKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQEQLIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 KKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQEQLIP
              160       170       180       190       200       210

            290       300   
pF1KB8 NLAMKEVIDAFISENGWVEDY
       :::::::::::::::::::::
CCDS76 NLAMKEVIDAFISENGWVEDY
              220       230 




303 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:52:24 2016 done: Sat Nov  5 20:52:25 2016
 Total Scan time:  2.680 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]