FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8184, 322 aa
  1>>>pF1KB8184 322 - 322 aa - 322 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9500+/-0.000801; mu= 5.3381+/- 0.049
 mean_var=159.9997+/-32.480, 0's: 0 Z-trim(114.0): 22  B-trim: 0 in 0/51
 Lambda= 0.101395
 statistics sampled from 14609 (14623) to 14609 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.769), E-opt: 0.2 (0.449), width:  16
 Scan time:  2.510

The best scores are:                                      opt bits E(32554)
CCDS43370.1 CXXC5 gene_id:51523|Hs108|chr5         ( 322) 2110 319.8 1.8e-87
CCDS3665.2 CXXC4 gene_id:80319|Hs108|chr4          ( 367)  462 78.8 7.5e-15


>>CCDS43370.1 CXXC5 gene_id:51523|Hs108|chr5              (322 aa)
 initn: 2110 init1: 2110 opt: 2110  Z-score: 1683.8  bits: 319.8 E(32554): 1.8e-87
Smith-Waterman score: 2110; 100.0% identity (100.0% similar) in 322 aa overlap (1-322:1-322)

               10        20        30        40        50        60
pF1KB8 MSSLGGGSQDAGGSSSSSTNGSGGSGSSGPKAGAADKSAVVAAAAPASVADDTPPPERRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MSSLGGGSQDAGGSSSSSTNGSGGSGSSGPKAGAADKSAVVAAAAPASVADDTPPPERRN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KSGIISEPLNKSLRRSRPLSHYSSFGSSGGSGGGSMMGGESADKATAAAAAASLLANGHD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KSGIISEPLNKSLRRSRPLSHYSSFGSSGGSGGGSMMGGESADKATAAAAAASLLANGHD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LAAAMAVDKSNPTSKHKSGAVASLLSKAERATELAAEGQLTLQQFAQSTEMLKRVVQEHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LAAAMAVDKSNPTSKHKSGAVASLLSKAERATELAAEGQLTLQQFAQSTEMLKRVVQEHL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 PLMSEAGAGLPDMEAVAGAEALNGQSDFPYLGAFPINPGLFIMTPAGVFLAESALHMAGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PLMSEAGAGLPDMEAVAGAEALNGQSDFPYLGAFPINPGLFIMTPAGVFLAESALHMAGL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 AEYPMQGELASAISSGKKKRKRCGMCAPCRRRINCEQCSSCRNRKTGHQICKFRKCEELK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 AEYPMQGELASAISSGKKKRKRCGMCAPCRRRINCEQCSSCRNRKTGHQICKFRKCEELK
              250       260       270       280       290       300

              310       320  
pF1KB8 KKPSAALEKVMLPTGAAFRWFQ
       ::::::::::::::::::::::
CCDS43 KKPSAALEKVMLPTGAAFRWFQ
              310       320  

>>CCDS3665.2 CXXC4 gene_id:80319|Hs108|chr4               (367 aa)
 initn: 562 init1: 389 opt: 462  Z-score: 380.1  bits: 78.8 E(32554): 7.5e-15
Smith-Waterman score: 522; 38.9% identity (66.1% similar) in 257 aa overlap (86-321:118-366)

          60        70        80        90       100       110     
pF1KB8 PERRNKSGIISEPLNKSLRRSRPLSHYSSFGSSGGSGGGSMMGGESADKATAAAAAASLL
                                     :..::.:::.  :: .. :...:::..:  
CCDS36 PWNCDNAATAAAATAMLWGSGGGGGGGGGGGGGGGGGGGGGGGGGGGRKSSSAAASSSAS
        90       100       110       120       130       140       

         120       130       140         150       160       170   
pF1KB8 ANGHDLAAAMAVDKSNPTSKHKSGAVASLLSK--AERATELAAEGQLTLQQFAQSTEMLK
       ...  : :      ..  .   .:. .:.  .  ..:  . .   . .::.   .:..:.
CCDS36 SSSAILPA------GGGGGGGGGGSRTSMHHRNDSQRLGKAGCPPEPSLQM--ANTNFLS
       150             160       170       180       190           

           180            190       200       210       220        
pF1KB8 RVVQEHL-PL----MSEAGAGLPDMEAVAGAEALNGQSDFPYLGAFPINPGLFIMT----
        .  ::  ::    :..   :  . : .   : ..  : .: ::.. . ::...::    
CCDS36 TLSPEHCRPLAGECMNKLKCGAAEAEIMNLPERVGTFSAIPALGGISLPPGVIVMTALHS
     200       210       220       230       240       250         

          230         240       250               260       270    
pF1KB8 PAGVFLA--ESALHMAGLAEYPMQGELASAISSG--------KKKRKRCGMCAPCRRRIN
       ::..  :  .::...:.::. :..   .:. :::        ::::::::.:.::.: ::
CCDS36 PAAASAAVTDSAFQIANLADCPQNHSSSSSSSSGGAGGANPAKKKRKRCGVCVPCKRLIN
     260       270       280       290       300       310         

          280       290       300       310       320  
pF1KB8 CEQCSSCRNRKTGHQICKFRKCEELKKKPSAALEKVMLPTGAAFRWFQ
       :  ::::::::::::::::::::::::::...::.. .:.. ::::: 
CCDS36 CGVCSSCRNRKTGHQICKFRKCEELKKKPGTSLERTPVPSAEAFRWFF
     320       330       340       350       360       




322 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:00:04 2016 done: Fri Nov  4 22:00:04 2016
 Total Scan time:  2.510 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]