FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8182, 232 aa
  1>>>pF1KB8182 232 - 232 aa - 232 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.6806+/-0.00108; mu= 0.5539+/- 0.065
 mean_var=225.6905+/-45.526, 0's: 0 Z-trim(109.6): 36  B-trim: 183 in 1/53
 Lambda= 0.085372
 statistics sampled from 10976 (10989) to 10976 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.679), E-opt: 0.2 (0.338), width:  16
 Scan time:  1.810

The best scores are:                                      opt bits E(32554)
CCDS5828.1 CHCHD3 gene_id:54927|Hs108|chr7         ( 227) 1420 187.1 8.1e-48
CCDS3041.1 CHCHD6 gene_id:84303|Hs108|chr3         ( 235)  437 66.1 2.3e-11


>>CCDS5828.1 CHCHD3 gene_id:54927|Hs108|chr7              (227 aa)
 initn: 1426 init1: 755 opt: 1420  Z-score: 972.0  bits: 187.1 E(32554): 8.1e-48
Smith-Waterman score: 1420; 97.8% identity (97.8% similar) in 232 aa overlap (1-232:1-227)

               10        20        30        40        50        60
pF1KB8 MGGTTSTRRVTFEADENENITVVKGIRLSENVIDRMKESSPSGSKSQRYSGAYGASVSDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MGGTTSTRRVTFEADENENITVVKGIRLSENVIDRMKESSPSGSKSQRYSGAYGASVSDE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 ELKRRVAEELALEQAKKESEDQKRLKQAKELDRERAAANEQLTRAILRERICSEEERAKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ELKRRVAEELALEQAKKESEDQKRLKQAKELDRERAAANEQLTRAILRERICSEEERAKA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 KHLDIEDKARQLEEKDRVLKKQDAFYKEQLARLEERSSEFYRVTTEQYQKAAEEVEAKFK
       :::     ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 KHL-----ARQLEEKDRVLKKQDAFYKEQLARLEERSSEFYRVTTEQYQKAAEEVEAKFK
                   130       140       150       160       170     

              190       200       210       220       230  
pF1KB8 RYESHPVCADLQAKILQCYRENTHQTLKCSALATQYMHCVNHAKQSMLEKGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 RYESHPVCADLQAKILQCYRENTHQTLKCSALATQYMHCVNHAKQSMLEKGG
         180       190       200       210       220       

>>CCDS3041.1 CHCHD6 gene_id:84303|Hs108|chr3              (235 aa)
 initn: 495 init1: 312 opt: 437  Z-score: 317.4  bits: 66.1 E(32554): 2.3e-11
Smith-Waterman score: 459; 35.1% identity (71.5% similar) in 239 aa overlap (1-225:1-234)

                 10        20        30        40        50        
pF1KB8 MGGTTST--RRVTFEADENENITVVKGIRLSENVIDRMKESSPSGSKSQRYSGAYGASVS
       ::.: :.  :::.: .::.: . :..:.::::::..::::  ::.      :...:  ..
CCDS30 MGSTESSEGRRVSFGVDEEERVRVLQGVRLSENVVNRMKE--PSSPPPAPTSSTFG--LQ
               10        20        30        40          50        

       60        70        80         90       100       110       
pF1KB8 DEELKRRVAEELALEQAKKESEDQKRLKQA-KELDRERAAANEQLTRAILRERICSEEER
       : .:.    :    ..... ... . .:.. :. ..:.:: ...: ..  :::  .  ..
CCDS30 DGNLRAPHKESTLPRSGSSGGQQPSGMKEGVKRYEQEHAAIQDKLFQVAKRER-EAATKH
         60        70        80        90       100        110     

       120                  130       140       150       160      
pF1KB8 AKAK------HLDIEDK-----ARQLEEKDRVLKKQDAFYKEQLARLEERSSEFYRVTTE
       .::.       .. :..     ::.:: ..  :...:.:::::: :.:....:.:....:
CCDS30 SKASLPTGEGSISHEEQKSVRLARELESREAELRRRDTFYKEQLERIERKNAEMYKLSSE
         120       130       140       150       160       170     

        170       180       190       200       210       220      
pF1KB8 QYQKAAEEVEAKFKRYESHPVCADLQAKILQCYRENTHQTLKCSALATQYMHCVNHAKQS
       :...:: ..:. .:  . .:::. :::.::.:::.  :..: :: :.  :..::. :.. 
CCDS30 QFHEAASKMESTIKPRRVEPVCSGLQAQILHCYRDRPHEVLLCSDLVKAYQRCVSAAHKG
         180       190       200       210       220       230     

        230  
pF1KB8 MLEKGG




232 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 02:18:52 2016 done: Sat Nov  5 02:18:52 2016
 Total Scan time:  1.810 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]