FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8177, 534 aa
  1>>>pF1KB8177 534 - 534 aa - 534 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6210+/-0.000822; mu= 13.6050+/- 0.050
 mean_var=97.3342+/-19.074, 0's: 0 Z-trim(109.9): 11  B-trim: 0 in 0/50
 Lambda= 0.129999
 statistics sampled from 11238 (11240) to 11238 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.682), E-opt: 0.2 (0.345), width:  16
 Scan time:  3.620

The best scores are:                                      opt bits E(32554)
CCDS72864.1 POLR3C gene_id:10623|Hs108|chr1        ( 534) 3431 653.6 1.6e-187


>>CCDS72864.1 POLR3C gene_id:10623|Hs108|chr1             (534 aa)
 initn: 3431 init1: 3431 opt: 3431  Z-score: 3480.0  bits: 653.6 E(32554): 1.6e-187
Smith-Waterman score: 3431; 100.0% identity (100.0% similar) in 534 aa overlap (1-534:1-534)

               10        20        30        40        50        60
pF1KB8 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 NLVSYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKLTMSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 NLVSYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKLTMSA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 VVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPSVPTTENSDPGPPPPAPTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 VVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPSVPTTENSDPGPPPPAPTL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 VINEKDMYLVPKLSLIGKGKRRRSSDEDAAGEPKAKRPKYTTDNKEPIPDDGIYWQANLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 VINEKDMYLVPKLSLIGKGKRRRSSDEDAAGEPKAKRPKYTTDNKEPIPDDGIYWQANLD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 RFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMSEITTSSSAPFTQPLSSNEIFRSLPVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 RFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMSEITTSSSAPFTQPLSSNEIFRSLPVG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 YNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYVINLHKALASLATATLESVVQERFGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 YNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYVINLHKALASLATATLESVVQERFGS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 RCARIFRLVLQKKHIEQKQVEDFAMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 RCARIFRLVLQKKHIEQKQVEDFAMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 FYLYTVNILSAARMLLHRCYKSIANLIERRQFETKENKRLLEKSQRVEAIIASMQATGAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 FYLYTVNILSAARMLLHRCYKSIANLIERRQFETKENKRLLEKSQRVEAIIASMQATGAE
              430       440       450       460       470       480

              490       500       510       520       530    
pF1KB8 EAQLQEIEEMITAPERQQLETLKRNVNKLDASEIQVDETIFLLESYIECTMKRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 EAQLQEIEEMITAPERQQLETLKRNVNKLDASEIQVDETIFLLESYIECTMKRQ
              490       500       510       520       530    




534 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:15:44 2016 done: Fri Nov  4 20:15:44 2016
 Total Scan time:  3.620 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]