FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8172, 140 aa
  1>>>pF1KB8172 140 - 140 aa - 140 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3539+/-0.000805; mu= 11.9213+/- 0.049
 mean_var=68.6687+/-13.566, 0's: 0 Z-trim(107.1): 10  B-trim: 7 in 1/50
 Lambda= 0.154773
 statistics sampled from 9363 (9370) to 9363 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.667), E-opt: 0.2 (0.288), width:  16
 Scan time:  1.710

The best scores are:                                      opt bits E(32554)
CCDS3634.1 SNCA gene_id:6622|Hs108|chr4            ( 140)  879 204.6 1.6e-53
CCDS43252.1 SNCA gene_id:6622|Hs108|chr4           ( 112)  612 144.9 1.2e-35
CCDS4406.1 SNCB gene_id:6620|Hs108|chr5            ( 134)  459 110.8 2.7e-25
CCDS7380.1 SNCG gene_id:6623|Hs108|chr10           ( 127)  388 94.9 1.5e-20


>>CCDS3634.1 SNCA gene_id:6622|Hs108|chr4                 (140 aa)
 initn: 879 init1: 879 opt: 879  Z-score: 1074.1  bits: 204.6 E(32554): 1.6e-53
Smith-Waterman score: 879; 100.0% identity (100.0% similar) in 140 aa overlap (1-140:1-140)

               10        20        30        40        50        60
pF1KB8 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP
               70        80        90       100       110       120

              130       140
pF1KB8 DNEAYEMPSEEGYQDYEPEA
       ::::::::::::::::::::
CCDS36 DNEAYEMPSEEGYQDYEPEA
              130       140

>>CCDS43252.1 SNCA gene_id:6622|Hs108|chr4                (112 aa)
 initn: 612 init1: 612 opt: 612  Z-score: 753.4  bits: 144.9 E(32554): 1.2e-35
Smith-Waterman score: 618; 80.0% identity (80.0% similar) in 140 aa overlap (1-140:1-112)

               10        20        30        40        50        60
pF1KB8 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP
       ::::::::::::::::::::::::::::::::::::::::::                  
CCDS43 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGK------------------
               70        80        90       100                    

              130       140
pF1KB8 DNEAYEMPSEEGYQDYEPEA
                 ::::::::::
CCDS43 ----------EGYQDYEPEA
                      110  

>>CCDS4406.1 SNCB gene_id:6620|Hs108|chr5                 (134 aa)
 initn: 602 init1: 383 opt: 459  Z-score: 567.6  bits: 110.8 E(32554): 2.7e-25
Smith-Waterman score: 496; 61.6% identity (79.5% similar) in 146 aa overlap (1-140:1-134)

               10        20        30        40        50        60
pF1KB8 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
       ::::::::: ::::::::::::::::.::: :::::::::::::.::::.:::.::::::
CCDS44 MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTREGVVQGVASVAEKTK
               10        20        30        40        50        60

               70        80        90       100             110    
pF1KB8 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLG---KNEE---GAPQEGILE
       ::....:::: .:           ::.::::::.::....    : ::    : .: ..:
CCDS44 EQASHLGGAVFSG-----------AGNIAAATGLVKREEFPTDLKPEEVAQEAAEEPLIE
               70                   80        90       100         

          120       130       140
pF1KB8 DMPVDPDNEAYEMPSEEGYQDYEPEA
        . ..:..:.:: : .: ::.:::::
CCDS44 PL-MEPEGESYEDPPQEEYQEYEPEA
     110        120       130    

>>CCDS7380.1 SNCG gene_id:6623|Hs108|chr10                (127 aa)
 initn: 549 init1: 381 opt: 388  Z-score: 482.2  bits: 94.9 E(32554): 1.5e-20
Smith-Waterman score: 388; 62.7% identity (88.2% similar) in 110 aa overlap (1-110:1-107)

               10        20        30        40        50        60
pF1KB8 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
       :::: ::.: ::::::.:.:::::::.::: ::::::.:::.::::.::..:..::::::
CCDS73 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKENVVQSVTSVAEKTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP
       ::.. :. :::..:..:: :::: : .::...: :.:..:   . .:::.          
CCDS73 EQANAVSEAVVSSVNTVATKTVEEAENIAVTSGVVRKEDL---RPSAPQQEGEASKEKEE
               70        80        90       100          110       

              130       140
pF1KB8 DNEAYEMPSEEGYQDYEPEA
                           
CCDS73 VAEEAQSGGD          
       120                 




140 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:14:02 2016 done: Fri Nov  4 10:14:03 2016
 Total Scan time:  1.710 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]