FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8170, 369 aa
  1>>>pF1KB8170 369 - 369 aa - 369 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3222+/-0.000315; mu= 8.8680+/- 0.020
 mean_var=135.8282+/-27.436, 0's: 0 Z-trim(120.4): 7  B-trim: 1122 in 1/55
 Lambda= 0.110047
 statistics sampled from 35585 (35592) to 35585 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.769), E-opt: 0.2 (0.417), width:  16
 Scan time:  8.580

The best scores are:                                      opt bits E(85289)
NP_597814 (OMIM: 602945) transcriptional adapter 3 ( 369) 2474 403.7 3.6e-112
NP_006345 (OMIM: 602945) transcriptional adapter 3 ( 432) 2474 403.7 4.1e-112
NP_001265199 (OMIM: 602945) transcriptional adapte ( 432) 2474 403.7 4.1e-112


>>NP_597814 (OMIM: 602945) transcriptional adapter 3 iso  (369 aa)
 initn: 2474 init1: 2474 opt: 2474  Z-score: 2134.8  bits: 403.7 E(85289): 3.6e-112
Smith-Waterman score: 2474; 100.0% identity (100.0% similar) in 369 aa overlap (1-369:1-369)

               10        20        30        40        50        60
pF1KB8 MSELKDCPLQFHDFKSVDHLKVCPRYTAVLARSEDDGIGIEELDTLQLELETLLSSASRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_597 MSELKDCPLQFHDFKSVDHLKVCPRYTAVLARSEDDGIGIEELDTLQLELETLLSSASRR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LRVLEAETQILTDWQDKKGDRRFLKLGRDHELGAPPKHGKPKKQKLEGKAGHGPGPGPGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_597 LRVLEAETQILTDWQDKKGDRRFLKLGRDHELGAPPKHGKPKKQKLEGKAGHGPGPGPGR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PKSKNLQPKIQEYEFTDDPIDVPRIPKNDAPNRFWASVEPYCADITSEEVRTLEELLKPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_597 PKSKNLQPKIQEYEFTDDPIDVPRIPKNDAPNRFWASVEPYCADITSEEVRTLEELLKPP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 EDEAEHYKIPPLGKHYSQRWAQEDLLEEQKDGARAAAVADKKKGLMGPLTELDTKDVDAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_597 EDEAEHYKIPPLGKHYSQRWAQEDLLEEQKDGARAAAVADKKKGLMGPLTELDTKDVDAL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 LKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDSPIPDMSGKESGADGASTSPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_597 LKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDSPIPDMSGKESGADGASTSPR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 NQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAELRKRQAELKALSAHN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_597 NQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAELRKRQAELKALSAHN
              310       320       330       340       350       360

                
pF1KB8 RTKKHDLLR
       :::::::::
NP_597 RTKKHDLLR
                

>>NP_006345 (OMIM: 602945) transcriptional adapter 3 iso  (432 aa)
 initn: 2474 init1: 2474 opt: 2474  Z-score: 2133.9  bits: 403.7 E(85289): 4.1e-112
Smith-Waterman score: 2474; 100.0% identity (100.0% similar) in 369 aa overlap (1-369:1-369)

               10        20        30        40        50        60
pF1KB8 MSELKDCPLQFHDFKSVDHLKVCPRYTAVLARSEDDGIGIEELDTLQLELETLLSSASRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MSELKDCPLQFHDFKSVDHLKVCPRYTAVLARSEDDGIGIEELDTLQLELETLLSSASRR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LRVLEAETQILTDWQDKKGDRRFLKLGRDHELGAPPKHGKPKKQKLEGKAGHGPGPGPGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LRVLEAETQILTDWQDKKGDRRFLKLGRDHELGAPPKHGKPKKQKLEGKAGHGPGPGPGR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PKSKNLQPKIQEYEFTDDPIDVPRIPKNDAPNRFWASVEPYCADITSEEVRTLEELLKPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PKSKNLQPKIQEYEFTDDPIDVPRIPKNDAPNRFWASVEPYCADITSEEVRTLEELLKPP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 EDEAEHYKIPPLGKHYSQRWAQEDLLEEQKDGARAAAVADKKKGLMGPLTELDTKDVDAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EDEAEHYKIPPLGKHYSQRWAQEDLLEEQKDGARAAAVADKKKGLMGPLTELDTKDVDAL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 LKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDSPIPDMSGKESGADGASTSPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDSPIPDMSGKESGADGASTSPR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 NQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAELRKRQAELKALSAHN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 NQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAELRKRQAELKALSAHN
              310       320       330       340       350       360

                                                                   
pF1KB8 RTKKHDLLR                                                   
       :::::::::                                                   
NP_006 RTKKHDLLRLAKEEVSRQELRQRVRMADNEVMDAFRKIMAARQKKRTPTKKEKDQAWKTL
              370       380       390       400       410       420

>>NP_001265199 (OMIM: 602945) transcriptional adapter 3   (432 aa)
 initn: 2474 init1: 2474 opt: 2474  Z-score: 2133.9  bits: 403.7 E(85289): 4.1e-112
Smith-Waterman score: 2474; 100.0% identity (100.0% similar) in 369 aa overlap (1-369:1-369)

               10        20        30        40        50        60
pF1KB8 MSELKDCPLQFHDFKSVDHLKVCPRYTAVLARSEDDGIGIEELDTLQLELETLLSSASRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSELKDCPLQFHDFKSVDHLKVCPRYTAVLARSEDDGIGIEELDTLQLELETLLSSASRR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LRVLEAETQILTDWQDKKGDRRFLKLGRDHELGAPPKHGKPKKQKLEGKAGHGPGPGPGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRVLEAETQILTDWQDKKGDRRFLKLGRDHELGAPPKHGKPKKQKLEGKAGHGPGPGPGR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PKSKNLQPKIQEYEFTDDPIDVPRIPKNDAPNRFWASVEPYCADITSEEVRTLEELLKPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PKSKNLQPKIQEYEFTDDPIDVPRIPKNDAPNRFWASVEPYCADITSEEVRTLEELLKPP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 EDEAEHYKIPPLGKHYSQRWAQEDLLEEQKDGARAAAVADKKKGLMGPLTELDTKDVDAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EDEAEHYKIPPLGKHYSQRWAQEDLLEEQKDGARAAAVADKKKGLMGPLTELDTKDVDAL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 LKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDSPIPDMSGKESGADGASTSPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDSPIPDMSGKESGADGASTSPR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 NQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAELRKRQAELKALSAHN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAELRKRQAELKALSAHN
              310       320       330       340       350       360

                                                                   
pF1KB8 RTKKHDLLR                                                   
       :::::::::                                                   
NP_001 RTKKHDLLRLAKEEVSRQELRQRVRMADNEVMDAFRKIMAARQKKRTPTKKEKDQAWKTL
              370       380       390       400       410       420




369 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:12:44 2016 done: Fri Nov  4 10:12:45 2016
 Total Scan time:  8.580 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]