FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8170, 369 aa
  1>>>pF1KB8170 369 - 369 aa - 369 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2305+/-0.00077; mu= 9.4878+/- 0.046
 mean_var=132.1636+/-26.053, 0's: 0 Z-trim(113.2): 4  B-trim: 0 in 0/52
 Lambda= 0.111563
 statistics sampled from 13831 (13834) to 13831 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.772), E-opt: 0.2 (0.425), width:  16
 Scan time:  2.490

The best scores are:                                      opt bits E(32554)
CCDS2584.1 TADA3 gene_id:10474|Hs108|chr3          ( 369) 2474 408.9 3.6e-114
CCDS2583.1 TADA3 gene_id:10474|Hs108|chr3          ( 432) 2474 409.0 4.1e-114


>>CCDS2584.1 TADA3 gene_id:10474|Hs108|chr3               (369 aa)
 initn: 2474 init1: 2474 opt: 2474  Z-score: 2163.3  bits: 408.9 E(32554): 3.6e-114
Smith-Waterman score: 2474; 100.0% identity (100.0% similar) in 369 aa overlap (1-369:1-369)

               10        20        30        40        50        60
pF1KB8 MSELKDCPLQFHDFKSVDHLKVCPRYTAVLARSEDDGIGIEELDTLQLELETLLSSASRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 MSELKDCPLQFHDFKSVDHLKVCPRYTAVLARSEDDGIGIEELDTLQLELETLLSSASRR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LRVLEAETQILTDWQDKKGDRRFLKLGRDHELGAPPKHGKPKKQKLEGKAGHGPGPGPGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 LRVLEAETQILTDWQDKKGDRRFLKLGRDHELGAPPKHGKPKKQKLEGKAGHGPGPGPGR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PKSKNLQPKIQEYEFTDDPIDVPRIPKNDAPNRFWASVEPYCADITSEEVRTLEELLKPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 PKSKNLQPKIQEYEFTDDPIDVPRIPKNDAPNRFWASVEPYCADITSEEVRTLEELLKPP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 EDEAEHYKIPPLGKHYSQRWAQEDLLEEQKDGARAAAVADKKKGLMGPLTELDTKDVDAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 EDEAEHYKIPPLGKHYSQRWAQEDLLEEQKDGARAAAVADKKKGLMGPLTELDTKDVDAL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 LKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDSPIPDMSGKESGADGASTSPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 LKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDSPIPDMSGKESGADGASTSPR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 NQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAELRKRQAELKALSAHN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 NQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAELRKRQAELKALSAHN
              310       320       330       340       350       360

                
pF1KB8 RTKKHDLLR
       :::::::::
CCDS25 RTKKHDLLR
                

>>CCDS2583.1 TADA3 gene_id:10474|Hs108|chr3               (432 aa)
 initn: 2474 init1: 2474 opt: 2474  Z-score: 2162.3  bits: 409.0 E(32554): 4.1e-114
Smith-Waterman score: 2474; 100.0% identity (100.0% similar) in 369 aa overlap (1-369:1-369)

               10        20        30        40        50        60
pF1KB8 MSELKDCPLQFHDFKSVDHLKVCPRYTAVLARSEDDGIGIEELDTLQLELETLLSSASRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 MSELKDCPLQFHDFKSVDHLKVCPRYTAVLARSEDDGIGIEELDTLQLELETLLSSASRR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LRVLEAETQILTDWQDKKGDRRFLKLGRDHELGAPPKHGKPKKQKLEGKAGHGPGPGPGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 LRVLEAETQILTDWQDKKGDRRFLKLGRDHELGAPPKHGKPKKQKLEGKAGHGPGPGPGR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PKSKNLQPKIQEYEFTDDPIDVPRIPKNDAPNRFWASVEPYCADITSEEVRTLEELLKPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 PKSKNLQPKIQEYEFTDDPIDVPRIPKNDAPNRFWASVEPYCADITSEEVRTLEELLKPP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 EDEAEHYKIPPLGKHYSQRWAQEDLLEEQKDGARAAAVADKKKGLMGPLTELDTKDVDAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 EDEAEHYKIPPLGKHYSQRWAQEDLLEEQKDGARAAAVADKKKGLMGPLTELDTKDVDAL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 LKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDSPIPDMSGKESGADGASTSPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 LKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDSPIPDMSGKESGADGASTSPR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 NQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAELRKRQAELKALSAHN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 NQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAELRKRQAELKALSAHN
              310       320       330       340       350       360

                                                                   
pF1KB8 RTKKHDLLR                                                   
       :::::::::                                                   
CCDS25 RTKKHDLLRLAKEEVSRQELRQRVRMADNEVMDAFRKIMAARQKKRTPTKKEKDQAWKTL
              370       380       390       400       410       420




369 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:12:43 2016 done: Fri Nov  4 10:12:43 2016
 Total Scan time:  2.490 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]