FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8169, 332 aa
  1>>>pF1KB8169 332 - 332 aa - 332 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6638+/-0.000664; mu= 11.3192+/- 0.040
 mean_var=110.9851+/-22.049, 0's: 0 Z-trim(114.2): 6  B-trim: 4 in 1/50
 Lambda= 0.121742
 statistics sampled from 14747 (14753) to 14747 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.793), E-opt: 0.2 (0.453), width:  16
 Scan time:  2.660

The best scores are:                                      opt bits E(32554)
CCDS5984.1 NEIL2 gene_id:252969|Hs108|chr8         ( 332) 2329 419.0 2.6e-117
CCDS47803.1 NEIL2 gene_id:252969|Hs108|chr8        ( 271) 1916 346.4 1.5e-95
CCDS47802.1 NEIL2 gene_id:252969|Hs108|chr8        ( 216) 1206 221.6 4.4e-58


>>CCDS5984.1 NEIL2 gene_id:252969|Hs108|chr8              (332 aa)
 initn: 2329 init1: 2329 opt: 2329  Z-score: 2219.4  bits: 419.0 E(32554): 2.6e-117
Smith-Waterman score: 2329; 100.0% identity (100.0% similar) in 332 aa overlap (1-332:1-332)

               10        20        30        40        50        60
pF1KB8 MPEGPLVRKFHHLVSPFVGQQVVKTGGSSKKLQPASLQSLWLQDTQVHGKKLFLRFDLDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MPEGPLVRKFHHLVSPFVGQQVVKTGGSSKKLQPASLQSLWLQDTQVHGKKLFLRFDLDE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 EMGPPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 EMGPPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 DAPAGDAGRWLRVSFGLFGSVWVNDFSRAKKANKRGDWRDPSPRLVLHFGGGGFLAFYNC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 DAPAGDAGRWLRVSFGLFGSVWVNDFSRAKKANKRGDWRDPSPRLVLHFGGGGFLAFYNC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 QLSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCYTLLDQRYFSGLGNIIKNEALYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 QLSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCYTLLDQRYFSGLGNIIKNEALYR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 AGIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQGRPQHTQVYQKEQCPAGHQVMKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 AGIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQGRPQHTQVYQKEQCPAGHQVMKE
              250       260       270       280       290       300

              310       320       330  
pF1KB8 AFGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS
       ::::::::::::::::::::::::::::::::
CCDS59 AFGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS
              310       320       330  

>>CCDS47803.1 NEIL2 gene_id:252969|Hs108|chr8             (271 aa)
 initn: 1916 init1: 1916 opt: 1916  Z-score: 1828.7  bits: 346.4 E(32554): 1.5e-95
Smith-Waterman score: 1916; 100.0% identity (100.0% similar) in 271 aa overlap (62-332:1-271)

              40        50        60        70        80        90 
pF1KB8 LQPASLQSLWLQDTQVHGKKLFLRFDLDEEMGPPGSSPTPEPPQKEVQKEGAADPKQVGE
                                     ::::::::::::::::::::::::::::::
CCDS47                               MGPPGSSPTPEPPQKEVQKEGAADPKQVGE
                                             10        20        30

             100       110       120       130       140       150 
pF1KB8 PSGQKTLDGSSRSAELVPQGEDDSEYLERDAPAGDAGRWLRVSFGLFGSVWVNDFSRAKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PSGQKTLDGSSRSAELVPQGEDDSEYLERDAPAGDAGRWLRVSFGLFGSVWVNDFSRAKK
               40        50        60        70        80        90

             160       170       180       190       200       210 
pF1KB8 ANKRGDWRDPSPRLVLHFGGGGFLAFYNCQLSWSSSPVVTPTCDILSEKFHRGQALEALG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ANKRGDWRDPSPRLVLHFGGGGFLAFYNCQLSWSSSPVVTPTCDILSEKFHRGQALEALG
              100       110       120       130       140       150

             220       230       240       250       260       270 
pF1KB8 QAQPVCYTLLDQRYFSGLGNIIKNEALYRAGIHPLSLGSVLSASRREVLVDHVVEFSTAW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QAQPVCYTLLDQRYFSGLGNIIKNEALYRAGIHPLSLGSVLSASRREVLVDHVVEFSTAW
              160       170       180       190       200       210

             280       290       300       310       320       330 
pF1KB8 LQGKFQGRPQHTQVYQKEQCPAGHQVMKEAFGPEDGLQRLTWWCPQCQPQLSEEPEQCQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LQGKFQGRPQHTQVYQKEQCPAGHQVMKEAFGPEDGLQRLTWWCPQCQPQLSEEPEQCQF
              220       230       240       250       260       270

        
pF1KB8 S
       :
CCDS47 S
        

>>CCDS47802.1 NEIL2 gene_id:252969|Hs108|chr8             (216 aa)
 initn: 1201 init1: 1201 opt: 1206  Z-score: 1156.2  bits: 221.6 E(32554): 4.4e-58
Smith-Waterman score: 1271; 65.1% identity (65.1% similar) in 332 aa overlap (1-332:1-216)

               10        20        30        40        50        60
pF1KB8 MPEGPLVRKFHHLVSPFVGQQVVKTGGSSKKLQPASLQSLWLQDTQVHGKKLFLRFDLDE
       :::::::::::::::::::::::::::::::::::::::::::::::             
CCDS47 MPEGPLVRKFHHLVSPFVGQQVVKTGGSSKKLQPASLQSLWLQDTQV-------------
               10        20        30        40                    

               70        80        90       100       110       120
pF1KB8 EMGPPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLER
                                                                   
CCDS47 ------------------------------------------------------------
                                                                   

              130       140       150       160       170       180
pF1KB8 DAPAGDAGRWLRVSFGLFGSVWVNDFSRAKKANKRGDWRDPSPRLVLHFGGGGFLAFYNC
                                                  :::::::::::::::::
CCDS47 -------------------------------------------RLVLHFGGGGFLAFYNC
                                                   50        60    

              190       200       210       220       230       240
pF1KB8 QLSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCYTLLDQRYFSGLGNIIKNEALYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QLSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCYTLLDQRYFSGLGNIIKNEALYR
           70        80        90       100       110       120    

              250       260       270       280       290       300
pF1KB8 AGIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQGRPQHTQVYQKEQCPAGHQVMKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 AGIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQGRPQHTQVYQKEQCPAGHQVMKE
          130       140       150       160       170       180    

              310       320       330  
pF1KB8 AFGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS
       ::::::::::::::::::::::::::::::::
CCDS47 AFGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS
          190       200       210      




332 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:11:39 2016 done: Fri Nov  4 10:11:39 2016
 Total Scan time:  2.660 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]