FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8160, 260 aa
  1>>>pF1KB8160 260 - 260 aa - 260 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8461+/-0.000353; mu= 17.9689+/- 0.022
 mean_var=74.8512+/-14.523, 0's: 0 Z-trim(115.4): 26  B-trim: 42 in 1/49
 Lambda= 0.148243
 statistics sampled from 25808 (25832) to 25808 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.687), E-opt: 0.2 (0.303), width:  16
 Scan time:  5.900

The best scores are:                                      opt bits E(85289)
NP_036474 (OMIM: 604444) BMP and activin membrane- ( 260) 1799 393.7 1.7e-109


>>NP_036474 (OMIM: 604444) BMP and activin membrane-boun  (260 aa)
 initn: 1799 init1: 1799 opt: 1799  Z-score: 2086.8  bits: 393.7 E(85289): 1.7e-109
Smith-Waterman score: 1799; 100.0% identity (100.0% similar) in 260 aa overlap (1-260:1-260)

               10        20        30        40        50        60
pF1KB8 MDRHSSYIFIWLQLELCAMAVLLTKGEIRCYCDAAHCVATGYMCKSELSACFSRLLDPQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MDRHSSYIFIWLQLELCAMAVLLTKGEIRCYCDAAHCVATGYMCKSELSACFSRLLDPQN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 SNSPLTHGCLDSLASTTDICQAKQARNHSGTTIPTLECCHEDMCNYRGLHDVLSPPRGEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 SNSPLTHGCLDSLASTTDICQAKQARNHSGTTIPTLECCHEDMCNYRGLHDVLSPPRGEA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 SGQGNRYQHDGSRNLITKVQELTSSKELWFRAAVIAVPIAGGLILVLLIMLALRMLRSEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 SGQGNRYQHDGSRNLITKVQELTSSKELWFRAAVIAVPIAGGLILVLLIMLALRMLRSEN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 KRLQDQRQQMLSRLHYSFHGHHSKKGQVAKLDLECMVPVSGHENCCLTCDKMRQADLSND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 KRLQDQRQQMLSRLHYSFHGHHSKKGQVAKLDLECMVPVSGHENCCLTCDKMRQADLSND
              190       200       210       220       230       240

              250       260
pF1KB8 KILSLVHWGMYSGHGKLEFV
       ::::::::::::::::::::
NP_036 KILSLVHWGMYSGHGKLEFV
              250       260




260 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:07:29 2016 done: Fri Nov  4 10:07:30 2016
 Total Scan time:  5.900 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]