FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8160, 260 aa
  1>>>pF1KB8160 260 - 260 aa - 260 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1582+/-0.000793; mu= 16.2472+/- 0.048
 mean_var=76.4155+/-15.284, 0's: 0 Z-trim(108.5): 22  B-trim: 0 in 0/50
 Lambda= 0.146718
 statistics sampled from 10226 (10238) to 10226 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.314), width:  16
 Scan time:  1.570

The best scores are:                                      opt bits E(32554)
CCDS7162.1 BAMBI gene_id:25805|Hs108|chr10         ( 260) 1799 389.8 9.8e-109


>>CCDS7162.1 BAMBI gene_id:25805|Hs108|chr10              (260 aa)
 initn: 1799 init1: 1799 opt: 1799  Z-score: 2065.6  bits: 389.8 E(32554): 9.8e-109
Smith-Waterman score: 1799; 100.0% identity (100.0% similar) in 260 aa overlap (1-260:1-260)

               10        20        30        40        50        60
pF1KB8 MDRHSSYIFIWLQLELCAMAVLLTKGEIRCYCDAAHCVATGYMCKSELSACFSRLLDPQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 MDRHSSYIFIWLQLELCAMAVLLTKGEIRCYCDAAHCVATGYMCKSELSACFSRLLDPQN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 SNSPLTHGCLDSLASTTDICQAKQARNHSGTTIPTLECCHEDMCNYRGLHDVLSPPRGEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 SNSPLTHGCLDSLASTTDICQAKQARNHSGTTIPTLECCHEDMCNYRGLHDVLSPPRGEA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 SGQGNRYQHDGSRNLITKVQELTSSKELWFRAAVIAVPIAGGLILVLLIMLALRMLRSEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 SGQGNRYQHDGSRNLITKVQELTSSKELWFRAAVIAVPIAGGLILVLLIMLALRMLRSEN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 KRLQDQRQQMLSRLHYSFHGHHSKKGQVAKLDLECMVPVSGHENCCLTCDKMRQADLSND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 KRLQDQRQQMLSRLHYSFHGHHSKKGQVAKLDLECMVPVSGHENCCLTCDKMRQADLSND
              190       200       210       220       230       240

              250       260
pF1KB8 KILSLVHWGMYSGHGKLEFV
       ::::::::::::::::::::
CCDS71 KILSLVHWGMYSGHGKLEFV
              250       260




260 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:07:29 2016 done: Fri Nov  4 10:07:29 2016
 Total Scan time:  1.570 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]