Result of FASTA (ccds) for
pF1KB8137
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8137, 345 aa
1>>>pF1KB8137 345 - 345 aa - 345 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1759+/-0.000739; mu= 12.9944+/- 0.045
mean_var=90.4879+/-17.974, 0's: 0 Z-trim(111.0): 9 B-trim: 0 in 0/53
Lambda= 0.134828
statistics sampled from 12029 (12036) to 12029 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.37), width: 16
Scan time: 1.770
The best scores are: opt bits E(32554)
CCDS77902.1 LDB2 gene_id:9079|Hs108|chr4 ( 313) 1245 251.7 5.9e-67
CCDS47031.1 LDB2 gene_id:9079|Hs108|chr4 ( 331) 1245 251.7 6.1e-67
CCDS77903.1 LDB2 gene_id:9079|Hs108|chr4 ( 371) 1245 251.8 6.7e-67
CCDS3420.1 LDB2 gene_id:9079|Hs108|chr4 ( 373) 1245 251.8 6.8e-67
CCDS7528.1 LDB1 gene_id:8861|Hs108|chr10 ( 375) 905 185.6 5.5e-47
CCDS44472.1 LDB1 gene_id:8861|Hs108|chr10 ( 411) 905 185.7 6e-47
>>CCDS77902.1 LDB2 gene_id:9079|Hs108|chr4 (313 aa)
initn: 1307 init1: 1235 opt: 1245 Z-score: 1315.6 bits: 251.7 E(32554): 5.9e-67
Smith-Waterman score: 1778; 88.5% identity (89.5% similar) in 305 aa overlap (1-277:1-305)
10 20 30 40 50 60
pF1KB8 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 DDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 DDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDC
70 80 90 100 110 120
130 140 150 160 170
pF1KB8 DQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMH---
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 DQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQD
130 140 150 160 170 180
180 190 200 210
pF1KB8 -------------------------LCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQ
:::::::::::::::::::::::::::::::::::
CCDS77 PQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQ
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB8 RMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::: .
CCDS77 RMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPIAS
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB8 VVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPPATQ
.. :
CCDS77 IARSPVSGCALRT
310
>>CCDS47031.1 LDB2 gene_id:9079|Hs108|chr4 (331 aa)
initn: 1307 init1: 1235 opt: 1245 Z-score: 1315.2 bits: 251.7 E(32554): 6.1e-67
Smith-Waterman score: 1791; 86.9% identity (88.9% similar) in 314 aa overlap (1-286:1-314)
10 20 30 40 50 60
pF1KB8 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 DDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDC
70 80 90 100 110 120
130 140 150 160 170
pF1KB8 DQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMH---
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQD
130 140 150 160 170 180
180 190 200 210
pF1KB8 -------------------------LCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQ
:::::::::::::::::::::::::::::::::::
CCDS47 PQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQ
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB8 RMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::: .
CCDS47 RMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPGLG
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB8 VVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPPATQ
.. . .: :. ::
CCDS47 AIPNCSLNPGRDGDLCHSTAVTPSGQFKEKH
310 320 330
>>CCDS77903.1 LDB2 gene_id:9079|Hs108|chr4 (371 aa)
initn: 1749 init1: 1235 opt: 1245 Z-score: 1314.5 bits: 251.8 E(32554): 6.7e-67
Smith-Waterman score: 2268; 92.0% identity (92.0% similar) in 373 aa overlap (1-345:1-371)
10 20 30 40 50 60
pF1KB8 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 DDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 DDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDC
70 80 90 100 110 120
130 140 150 160 170
pF1KB8 DQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMH---
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 DQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQD
130 140 150 160 170 180
180 190 200 210
pF1KB8 -------------------------LCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQ
:::::::::::::::::::::::::::::::::::
CCDS77 PQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQ
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB8 RMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
CCDS77 RMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQ--DVM
250 260 270 280 290
280 290 300 310 320 330
pF1KB8 VVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPPATQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 VVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPPATQ
300 310 320 330 340 350
340
pF1KB8 ETKSENPPPQASQ
:::::::::::::
CCDS77 ETKSENPPPQASQ
360 370
>>CCDS3420.1 LDB2 gene_id:9079|Hs108|chr4 (373 aa)
initn: 1235 init1: 1235 opt: 1245 Z-score: 1314.5 bits: 251.8 E(32554): 6.8e-67
Smith-Waterman score: 2297; 92.5% identity (92.5% similar) in 373 aa overlap (1-345:1-373)
10 20 30 40 50 60
pF1KB8 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 DDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDC
70 80 90 100 110 120
130 140 150 160 170
pF1KB8 DQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMH---
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQD
130 140 150 160 170 180
180 190 200 210
pF1KB8 -------------------------LCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQ
:::::::::::::::::::::::::::::::::::
CCDS34 PQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQ
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB8 RMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVM
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB8 VVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPPATQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPPATQ
310 320 330 340 350 360
340
pF1KB8 ETKSENPPPQASQ
:::::::::::::
CCDS34 ETKSENPPPQASQ
370
>>CCDS7528.1 LDB1 gene_id:8861|Hs108|chr10 (375 aa)
initn: 1465 init1: 892 opt: 905 Z-score: 957.0 bits: 185.6 E(32554): 5.5e-47
Smith-Waterman score: 1766; 70.6% identity (84.2% similar) in 367 aa overlap (8-345:10-375)
10 20 30 40 50
pF1KB8 MSSTPHDPFYSSPF-GPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATE
:.: . : ::::: : .:::.:.:::::. ::. ::::::::.::
CCDS75 MLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTE
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 FFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSIT
:::::: ::..::::::::::::::::::::: ..::::.:.:::.::: ::..:.. ..
CCDS75 FFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 VDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMH
.:::: .:::::::::::.::.:::: ::: :::.::::::::.:::.:::.::::::::
CCDS75 LDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMH
130 140 150 160 170 180
180 190 200
pF1KB8 ----------------------------LCVILEPMQELMSRHKTYNLSPRDCLKTCLFQ
::::::::::::::::::.:::::::::::::
CCDS75 AQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQ
190 200 210 220 230 240
210 220 230 240 250 260
pF1KB8 KWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVP
::::::::::::::: .:::::: : .:: ::.:.:.:...::::. :....::::::
CCDS75 KWQRMVAPPAEPTRQQPSKRRKRKMSGGSTM-SSGGGNTNNSNSKKKSPASTFALSSQVP
250 260 270 280 290
270 280 290 300 310 320
pF1KB8 DVMVVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPP
::::::::::::::::::::::::::::::.:::::.:::..:::::::: :::::::::
CCDS75 DVMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDEDSFNNSPALGANSPWNSKPP
300 310 320 330 340 350
330 340
pF1KB8 ATQETKSENPPPQASQ
..::.::::: ::::
CCDS75 SSQESKSENPTSQASQ
360 370
>>CCDS44472.1 LDB1 gene_id:8861|Hs108|chr10 (411 aa)
initn: 1465 init1: 892 opt: 905 Z-score: 956.4 bits: 185.7 E(32554): 6e-47
Smith-Waterman score: 1766; 70.6% identity (84.2% similar) in 367 aa overlap (8-345:46-411)
10 20 30
pF1KB8 MSSTPHDPFYSSPF-GPFYRRHTPYMVQPEYRIYEMN
:.: . : ::::: : .:::.:.:
CCDS44 KLYSPKEPPNGNAFPPFHPGTMLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFELN
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB8 KRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGG
::::. ::. ::::::::.:::::::: ::..::::::::::::::::::::: ..::::
CCDS44 KRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGG
80 90 100 110 120 130
100 110 120 130 140 150
pF1KB8 VTDLYYILKHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIK
.:.:::.::: ::..:.. ...:::: .:::::::::::.::.:::: ::: :::.::::
CCDS44 ATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIK
140 150 160 170 180 190
160 170 180
pF1KB8 TWHFTIRQYRELVPRSILAMH----------------------------LCVILEPMQEL
::::.:::.:::.:::::::: :::::::::::
CCDS44 TWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQEL
200 210 220 230 240 250
190 200 210 220 230 240
pF1KB8 MSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNA
:::::::.:::::::::::::::::::::::::::: .:::::: : .:: ::.:.:.
CCDS44 MSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPTRQQPSKRRKRKMSGGSTM-SSGGGNT
260 270 280 290 300 310
250 260 270 280 290 300
pF1KB8 NSTGSKKKTTAANLSLSSQVPDVMVVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDD
:...::::. :....::::::::::::::::::::::::::::::::::::.:::::.::
CCDS44 NNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDD
320 330 340 350 360 370
310 320 330 340
pF1KB8 EEDFNNSPALGNNSPWNSKPPATQETKSENPPPQASQ
:..:::::::: :::::::::..::.::::: ::::
CCDS44 EDSFNNSPALGANSPWNSKPPSSQESKSENPTSQASQ
380 390 400 410
345 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 09:52:58 2016 done: Fri Nov 4 09:52:58 2016
Total Scan time: 1.770 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]