Result of FASTA (omim) for pF1KB8121
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8121, 320 aa
  1>>>pF1KB8121 320 - 320 aa - 320 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7577+/-0.000548; mu= 12.5267+/- 0.035
 mean_var=376.6809+/-82.735, 0's: 0 Z-trim(117.1): 199  B-trim: 1684 in 1/52
 Lambda= 0.066083
 statistics sampled from 28499 (28726) to 28499 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.337), width:  16
 Scan time:  6.130

The best scores are:                                      opt bits E(85289)
NP_002127 (OMIM: 164017,615424,615426) heterogeneo ( 320) 2211 224.9 1.7e-58
NP_112420 (OMIM: 164017,615424,615426) heterogeneo ( 372) 1823 188.1 2.5e-47
XP_005268883 (OMIM: 164017,615424,615426) PREDICTE ( 372) 1823 188.1 2.5e-47
XP_016874740 (OMIM: 164017,615424,615426) PREDICTE ( 295) 1629 169.4 8.3e-42
NP_001317180 (OMIM: 605372) heterogeneous nuclear  ( 331) 1626 169.2 1.1e-41
NP_001317179 (OMIM: 605372) heterogeneous nuclear  ( 331) 1626 169.2 1.1e-41
NP_001317177 (OMIM: 605372) heterogeneous nuclear  ( 356) 1512 158.4 2.1e-38
NP_001317176 (OMIM: 605372) heterogeneous nuclear  ( 356) 1512 158.4 2.1e-38
NP_919223 (OMIM: 605372) heterogeneous nuclear rib ( 378) 1512 158.4 2.1e-38
NP_001317178 (OMIM: 605372) heterogeneous nuclear  ( 378) 1512 158.4 2.1e-38
XP_016867598 (OMIM: 600124,615422) PREDICTED: hete ( 341) 1276 135.8 1.2e-31
NP_002128 (OMIM: 600124,615422) heterogeneous nucl ( 341) 1276 135.8 1.2e-31
XP_016867599 (OMIM: 600124,615422) PREDICTED: hete ( 341) 1276 135.8 1.2e-31
XP_005249786 (OMIM: 600124,615422) PREDICTED: hete ( 353) 1276 135.9 1.2e-31
NP_112533 (OMIM: 600124,615422) heterogeneous nucl ( 353) 1276 135.9 1.2e-31
NP_006796 (OMIM: 609409) heterogeneous nuclear rib ( 305) 1021 111.4 2.4e-24
NP_112737 (OMIM: 601324) heterogeneous nuclear rib ( 336)  658 76.9 6.5e-14
NP_112556 (OMIM: 602688) heterogeneous nuclear rib ( 332)  655 76.6 7.9e-14
NP_112738 (OMIM: 601324) heterogeneous nuclear rib ( 355)  651 76.3 1.1e-13
NP_112740 (OMIM: 607137,609115) heterogeneous nucl ( 420)  648 76.1 1.4e-13
NP_004490 (OMIM: 602688) heterogeneous nuclear rib ( 285)  590 70.3 5.4e-12
XP_005257071 (OMIM: 607897) PREDICTED: RNA-binding ( 346)  577 69.2 1.4e-11
XP_005257072 (OMIM: 607897) PREDICTED: RNA-binding ( 346)  577 69.2 1.4e-11
NP_001309179 (OMIM: 607897) RNA-binding protein Mu ( 324)  567 68.2 2.6e-11
NP_001003810 (OMIM: 601324) heterogeneous nuclear  ( 287)  564 67.8   3e-11
NP_620412 (OMIM: 607897) RNA-binding protein Musas ( 328)  562 67.7 3.6e-11
NP_002129 (OMIM: 601324) heterogeneous nuclear rib ( 306)  557 67.2 4.9e-11
XP_011536664 (OMIM: 603328) PREDICTED: RNA-binding ( 343)  551 66.7 7.7e-11
NP_001193929 (OMIM: 607137,609115) heterogeneous n ( 363)  550 66.7 8.4e-11
XP_011536665 (OMIM: 603328) PREDICTED: RNA-binding ( 332)  548 66.4 9.2e-11
XP_006719466 (OMIM: 603328) PREDICTED: RNA-binding ( 351)  541 65.8 1.5e-10
XP_011536663 (OMIM: 603328) PREDICTED: RNA-binding ( 362)  541 65.8 1.5e-10
NP_002433 (OMIM: 603328) RNA-binding protein Musas ( 362)  541 65.8 1.5e-10
NP_001309180 (OMIM: 607897) RNA-binding protein Mu ( 255)  535 65.0 1.9e-10
XP_016879637 (OMIM: 607897) PREDICTED: RNA-binding ( 295)  535 65.1 2.1e-10
NP_733839 (OMIM: 607897) RNA-binding protein Musas ( 251)  531 64.6 2.5e-10
XP_011522588 (OMIM: 607897) PREDICTED: RNA-binding ( 242)  301 42.6 0.00098
XP_016879638 (OMIM: 607897) PREDICTED: RNA-binding ( 259)  301 42.7   0.001
XP_016880670 (OMIM: 601574,612237) PREDICTED: TATA ( 323)  301 42.8  0.0011
XP_011523617 (OMIM: 601574,612237) PREDICTED: TATA ( 501)  301 43.2  0.0014
NP_003478 (OMIM: 601574,612237) TATA-binding prote ( 589)  301 43.3  0.0015
NP_631961 (OMIM: 601574,612237) TATA-binding prote ( 592)  301 43.3  0.0015
XP_016882071 (OMIM: 607430) PREDICTED: DAZ-associa ( 327)  293 42.1  0.0019
XP_011526209 (OMIM: 607430) PREDICTED: DAZ-associa ( 548)  294 42.6  0.0023
XP_011526208 (OMIM: 607430) PREDICTED: DAZ-associa ( 549)  294 42.6  0.0023
XP_011526210 (OMIM: 607430) PREDICTED: DAZ-associa ( 521)  293 42.5  0.0024
XP_011526211 (OMIM: 607430) PREDICTED: DAZ-associa ( 521)  293 42.5  0.0024
XP_011526207 (OMIM: 607430) PREDICTED: DAZ-associa ( 549)  293 42.5  0.0024
XP_011526206 (OMIM: 607430) PREDICTED: DAZ-associa ( 550)  293 42.5  0.0024
XP_016879636 (OMIM: 607897) PREDICTED: RNA-binding ( 315)  289 41.7  0.0024


>>NP_002127 (OMIM: 164017,615424,615426) heterogeneous n  (320 aa)
 initn: 2211 init1: 2211 opt: 2211  Z-score: 1171.2  bits: 224.9 E(85289): 1.7e-58
Smith-Waterman score: 2211; 100.0% identity (100.0% similar) in 320 aa overlap (1-320:1-320)

               10        20        30        40        50        60
pF1KB8 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPR
              250       260       270       280       290       300

              310       320
pF1KB8 NQGGYGGSSSSSSYGSGRRF
       ::::::::::::::::::::
NP_002 NQGGYGGSSSSSSYGSGRRF
              310       320

>>NP_112420 (OMIM: 164017,615424,615426) heterogeneous n  (372 aa)
 initn: 2277 init1: 1752 opt: 1823  Z-score: 970.7  bits: 188.1 E(85289): 2.5e-47
Smith-Waterman score: 1962; 85.2% identity (85.2% similar) in 352 aa overlap (1-300:1-352)

               10        20        30        40        50        60
pF1KB8 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS
              190       200       210       220       230       240

              250                                                  
pF1KB8 GDGYNGFGNDG-------------------------------------------------
       :::::::::::                                                 
NP_112 GDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGG
              250       260       270       280       290       300

                260       270       280       290       300        
pF1KB8 ---SNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGS
          :::::::::::::::::::::::::::::::::::::::::::::::::        
NP_112 GSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGS
              310       320       330       340       350       360

      310       320
pF1KB8 SSSSSYGSGRRF
                   
NP_112 SSSSSYGSGRRF
              370  

>>XP_005268883 (OMIM: 164017,615424,615426) PREDICTED: h  (372 aa)
 initn: 2277 init1: 1752 opt: 1823  Z-score: 970.7  bits: 188.1 E(85289): 2.5e-47
Smith-Waterman score: 1962; 85.2% identity (85.2% similar) in 352 aa overlap (1-300:1-352)

               10        20        30        40        50        60
pF1KB8 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS
              190       200       210       220       230       240

              250                                                  
pF1KB8 GDGYNGFGNDG-------------------------------------------------
       :::::::::::                                                 
XP_005 GDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGG
              250       260       270       280       290       300

                260       270       280       290       300        
pF1KB8 ---SNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGS
          :::::::::::::::::::::::::::::::::::::::::::::::::        
XP_005 GSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGS
              310       320       330       340       350       360

      310       320
pF1KB8 SSSSSYGSGRRF
                   
XP_005 SSSSSYGSGRRF
              370  

>>XP_016874740 (OMIM: 164017,615424,615426) PREDICTED: h  (295 aa)
 initn: 1857 init1: 1554 opt: 1629  Z-score: 871.6  bits: 169.4 E(85289): 8.3e-42
Smith-Waterman score: 1960; 92.2% identity (92.2% similar) in 320 aa overlap (1-320:1-295)

               10        20        30        40        50        60
pF1KB8 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS
       ::::::::::::::::::::::::::::::::::::::::::::::              
XP_016 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRG--------------
              190       200       210       220                    

              250       260       270       280       290       300
pF1KB8 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPR
                  :::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 -----------SNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPR
                   230       240       250       260       270     

              310       320
pF1KB8 NQGGYGGSSSSSSYGSGRRF
       ::::::::::::::::::::
XP_016 NQGGYGGSSSSSSYGSGRRF
         280       290     

>>NP_001317180 (OMIM: 605372) heterogeneous nuclear ribo  (331 aa)
 initn: 1451 init1: 1296 opt: 1626  Z-score: 869.6  bits: 169.2 E(85289): 1.1e-41
Smith-Waterman score: 1629; 76.9% identity (89.5% similar) in 324 aa overlap (3-320:24-331)

                                    10        20        30         
pF1KB8                      MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGT
                              ....:::::::::::::::::::::.::: :::.:::
NP_001 MEVKPPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT
               10        20        30        40        50        60

      40        50        60        70        80        90         
pF1KB8 LTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPG
       ::::::::::.::::::::::::. :::::::: :::::::::::::::::::::: .::
NP_001 LTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPG
               70        80        90       100       110       120

     100       110       120       130       140       150         
pF1KB8 AHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV
       :::::::::::::::::::..::::::.:::::.::.: :: ::::::::::::::::.:
NP_001 AHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV
              130       140       150       160       170       180

     160       170       180       190        200       210        
pF1KB8 DKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSG-SGNFGGGRGGGFGGND-NFG
       ::::.:::::.:::::::.:::::::: ::.: ::::.: :::: : :::.:::.  :::
NP_001 DKIVVQKYHTINGHNCEVKKALSKQEMQSAGS-QRGRGGGSGNFMG-RGGNFGGGGGNFG
              190       200       210        220        230        

       220       230         240       250       260       270     
pF1KB8 RGGNFSGRGGFGGSRGG--GGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQS-SNFG
       :::::.::::.::. ::  :.:::.  ::::::.:: :.::::.:::::::..:. ::.:
NP_001 RGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDG-NYGGGGNYNDFGNYSGQQQSNYG
      240       250       260       270        280       290       

          280        290       300       310       320
pF1KB8 PMKGGNFGGRSSG-PYGGGGQYFAKPRNQGGYGGSSSSSSYGSGRRF
       :::::.::::::: :::::            ::....:..::: :::
NP_001 PMKGGSFGGRSSGSPYGGG------------YGSGGGSGGYGS-RRF
       300       310                   320        330 

>>NP_001317179 (OMIM: 605372) heterogeneous nuclear ribo  (331 aa)
 initn: 1451 init1: 1296 opt: 1626  Z-score: 869.6  bits: 169.2 E(85289): 1.1e-41
Smith-Waterman score: 1629; 76.9% identity (89.5% similar) in 324 aa overlap (3-320:24-331)

                                    10        20        30         
pF1KB8                      MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGT
                              ....:::::::::::::::::::::.::: :::.:::
NP_001 MEVKPPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT
               10        20        30        40        50        60

      40        50        60        70        80        90         
pF1KB8 LTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPG
       ::::::::::.::::::::::::. :::::::: :::::::::::::::::::::: .::
NP_001 LTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPG
               70        80        90       100       110       120

     100       110       120       130       140       150         
pF1KB8 AHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV
       :::::::::::::::::::..::::::.:::::.::.: :: ::::::::::::::::.:
NP_001 AHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV
              130       140       150       160       170       180

     160       170       180       190        200       210        
pF1KB8 DKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSG-SGNFGGGRGGGFGGND-NFG
       ::::.:::::.:::::::.:::::::: ::.: ::::.: :::: : :::.:::.  :::
NP_001 DKIVVQKYHTINGHNCEVKKALSKQEMQSAGS-QRGRGGGSGNFMG-RGGNFGGGGGNFG
              190       200       210        220        230        

       220       230         240       250       260       270     
pF1KB8 RGGNFSGRGGFGGSRGG--GGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQS-SNFG
       :::::.::::.::. ::  :.:::.  ::::::.:: :.::::.:::::::..:. ::.:
NP_001 RGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDG-NYGGGGNYNDFGNYSGQQQSNYG
      240       250       260       270        280       290       

          280        290       300       310       320
pF1KB8 PMKGGNFGGRSSG-PYGGGGQYFAKPRNQGGYGGSSSSSSYGSGRRF
       :::::.::::::: :::::            ::....:..::: :::
NP_001 PMKGGSFGGRSSGSPYGGG------------YGSGGGSGGYGS-RRF
       300       310                   320        330 

>>NP_001317177 (OMIM: 605372) heterogeneous nuclear ribo  (356 aa)
 initn: 1463 init1: 1288 opt: 1512  Z-score: 810.6  bits: 158.4 E(85289): 2.1e-38
Smith-Waterman score: 1536; 69.9% identity (83.8% similar) in 345 aa overlap (3-317:2-341)

               10        20        30        40        50        60
pF1KB8 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
         ....:::::::::::::::::::::.::: :::.:::::::::::::.::::::::::
NP_001  MEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFV
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB8 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
       ::. :::::::: :::::::::::::::::::::: .:::::::::::::::::::::..
NP_001 TYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYN
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KB8 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
       ::::::.:::::.::.: :: ::::::::::::::::.:::::.:::::.:::::::.::
NP_001 LRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA
     120       130       140       150       160       170         

              190        200       210        220       230        
pF1KB8 LSKQEMASASSSQRGRSG-SGNFGGGRGGGFGGND-NFGRGGNFSGRGGFGGSRGG--GG
       :::::: ::.: ::::.: :::: : :::.:::.  ::::::::.::::.::. ::  :.
NP_001 LSKQEMQSAGS-QRGRGGGSGNFMG-RGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGS
     180       190        200        210       220       230       

        240       250       260              270              280  
pF1KB8 YGGSGDGYNGFGNDGSNFGGGGSYNDFGNYN-------NQSSNFGP-------MKGGNFG
       :::.  ::::::.::.:.::: .:.. :.:.       ::....:         .:::::
NP_001 YGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFG
       240       250       260       270       280       290       

            290                   300       310       320          
pF1KB8 GRSSGPYGGGGQY--FAK----------PRNQGGYGGSSSSSSYGSGRRF          
       :   : :::::.:  :..          : . :..:: ::.: ::.:             
NP_001 G---GNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYGSR
          300       310       320       330       340       350    

NP_001 RF
         

>>NP_001317176 (OMIM: 605372) heterogeneous nuclear ribo  (356 aa)
 initn: 1463 init1: 1288 opt: 1512  Z-score: 810.6  bits: 158.4 E(85289): 2.1e-38
Smith-Waterman score: 1536; 69.9% identity (83.8% similar) in 345 aa overlap (3-317:2-341)

               10        20        30        40        50        60
pF1KB8 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
         ....:::::::::::::::::::::.::: :::.:::::::::::::.::::::::::
NP_001  MEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFV
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB8 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
       ::. :::::::: :::::::::::::::::::::: .:::::::::::::::::::::..
NP_001 TYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYN
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KB8 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
       ::::::.:::::.::.: :: ::::::::::::::::.:::::.:::::.:::::::.::
NP_001 LRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA
     120       130       140       150       160       170         

              190        200       210        220       230        
pF1KB8 LSKQEMASASSSQRGRSG-SGNFGGGRGGGFGGND-NFGRGGNFSGRGGFGGSRGG--GG
       :::::: ::.: ::::.: :::: : :::.:::.  ::::::::.::::.::. ::  :.
NP_001 LSKQEMQSAGS-QRGRGGGSGNFMG-RGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGS
     180       190        200        210       220       230       

        240       250       260              270              280  
pF1KB8 YGGSGDGYNGFGNDGSNFGGGGSYNDFGNYN-------NQSSNFGP-------MKGGNFG
       :::.  ::::::.::.:.::: .:.. :.:.       ::....:         .:::::
NP_001 YGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFG
       240       250       260       270       280       290       

            290                   300       310       320          
pF1KB8 GRSSGPYGGGGQY--FAK----------PRNQGGYGGSSSSSSYGSGRRF          
       :   : :::::.:  :..          : . :..:: ::.: ::.:             
NP_001 G---GNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYGSR
          300       310       320       330       340       350    

NP_001 RF
         

>>NP_919223 (OMIM: 605372) heterogeneous nuclear ribonuc  (378 aa)
 initn: 1463 init1: 1288 opt: 1512  Z-score: 810.4  bits: 158.4 E(85289): 2.1e-38
Smith-Waterman score: 1536; 69.9% identity (83.8% similar) in 345 aa overlap (3-317:24-363)

                                    10        20        30         
pF1KB8                      MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGT
                              ....:::::::::::::::::::::.::: :::.:::
NP_919 MEVKPPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT
               10        20        30        40        50        60

      40        50        60        70        80        90         
pF1KB8 LTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPG
       ::::::::::.::::::::::::. :::::::: :::::::::::::::::::::: .::
NP_919 LTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPG
               70        80        90       100       110       120

     100       110       120       130       140       150         
pF1KB8 AHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV
       :::::::::::::::::::..::::::.:::::.::.: :: ::::::::::::::::.:
NP_919 AHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV
              130       140       150       160       170       180

     160       170       180       190        200       210        
pF1KB8 DKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSG-SGNFGGGRGGGFGGND-NFG
       ::::.:::::.:::::::.:::::::: ::.: ::::.: :::: : :::.:::.  :::
NP_919 DKIVVQKYHTINGHNCEVKKALSKQEMQSAGS-QRGRGGGSGNFMG-RGGNFGGGGGNFG
              190       200       210        220        230        

       220       230         240       250       260               
pF1KB8 RGGNFSGRGGFGGSRGG--GGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYN-------N
       :::::.::::.::. ::  :.:::.  ::::::.::.:.::: .:.. :.:.       :
NP_919 RGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGN
      240       250       260       270       280       290        

      270              280       290                   300         
pF1KB8 QSSNFGP-------MKGGNFGGRSSGPYGGGGQY--FAK----------PRNQGGYGGSS
       :....:         .::::::   : :::::.:  :..          : . :..:: :
NP_919 QGGGYGGGGGYDGYNEGGNFGG---GNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRS
      300       310       320          330       340       350     

     310       320            
pF1KB8 SSSSYGSGRRF            
       :.: ::.:               
NP_919 SGSPYGGGYGSGGGSGGYGSRRF
         360       370        

>>NP_001317178 (OMIM: 605372) heterogeneous nuclear ribo  (378 aa)
 initn: 1463 init1: 1288 opt: 1512  Z-score: 810.4  bits: 158.4 E(85289): 2.1e-38
Smith-Waterman score: 1536; 69.9% identity (83.8% similar) in 345 aa overlap (3-317:24-363)

                                    10        20        30         
pF1KB8                      MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGT
                              ....:::::::::::::::::::::.::: :::.:::
NP_001 MEVKPPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT
               10        20        30        40        50        60

      40        50        60        70        80        90         
pF1KB8 LTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPG
       ::::::::::.::::::::::::. :::::::: :::::::::::::::::::::: .::
NP_001 LTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPG
               70        80        90       100       110       120

     100       110       120       130       140       150         
pF1KB8 AHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV
       :::::::::::::::::::..::::::.:::::.::.: :: ::::::::::::::::.:
NP_001 AHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV
              130       140       150       160       170       180

     160       170       180       190        200       210        
pF1KB8 DKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSG-SGNFGGGRGGGFGGND-NFG
       ::::.:::::.:::::::.:::::::: ::.: ::::.: :::: : :::.:::.  :::
NP_001 DKIVVQKYHTINGHNCEVKKALSKQEMQSAGS-QRGRGGGSGNFMG-RGGNFGGGGGNFG
              190       200       210        220        230        

       220       230         240       250       260               
pF1KB8 RGGNFSGRGGFGGSRGG--GGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYN-------N
       :::::.::::.::. ::  :.:::.  ::::::.::.:.::: .:.. :.:.       :
NP_001 RGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGN
      240       250       260       270       280       290        

      270              280       290                   300         
pF1KB8 QSSNFGP-------MKGGNFGGRSSGPYGGGGQY--FAK----------PRNQGGYGGSS
       :....:         .::::::   : :::::.:  :..          : . :..:: :
NP_001 QGGGYGGGGGYDGYNEGGNFGG---GNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRS
      300       310       320          330       340       350     

     310       320            
pF1KB8 SSSSYGSGRRF            
       :.: ::.:               
NP_001 SGSPYGGGYGSGGGSGGYGSRRF
         360       370        




320 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:43:04 2016 done: Fri Nov  4 09:43:06 2016
 Total Scan time:  6.130 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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