Result of FASTA (omim) for
pF1KB8121
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8121, 320 aa
1>>>pF1KB8121 320 - 320 aa - 320 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7577+/-0.000548; mu= 12.5267+/- 0.035
mean_var=376.6809+/-82.735, 0's: 0 Z-trim(117.1): 199 B-trim: 1684 in 1/52
Lambda= 0.066083
statistics sampled from 28499 (28726) to 28499 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.337), width: 16
Scan time: 6.130
The best scores are: opt bits E(85289)
NP_002127 (OMIM: 164017,615424,615426) heterogeneo ( 320) 2211 224.9 1.7e-58
NP_112420 (OMIM: 164017,615424,615426) heterogeneo ( 372) 1823 188.1 2.5e-47
XP_005268883 (OMIM: 164017,615424,615426) PREDICTE ( 372) 1823 188.1 2.5e-47
XP_016874740 (OMIM: 164017,615424,615426) PREDICTE ( 295) 1629 169.4 8.3e-42
NP_001317180 (OMIM: 605372) heterogeneous nuclear ( 331) 1626 169.2 1.1e-41
NP_001317179 (OMIM: 605372) heterogeneous nuclear ( 331) 1626 169.2 1.1e-41
NP_001317177 (OMIM: 605372) heterogeneous nuclear ( 356) 1512 158.4 2.1e-38
NP_001317176 (OMIM: 605372) heterogeneous nuclear ( 356) 1512 158.4 2.1e-38
NP_919223 (OMIM: 605372) heterogeneous nuclear rib ( 378) 1512 158.4 2.1e-38
NP_001317178 (OMIM: 605372) heterogeneous nuclear ( 378) 1512 158.4 2.1e-38
XP_016867598 (OMIM: 600124,615422) PREDICTED: hete ( 341) 1276 135.8 1.2e-31
NP_002128 (OMIM: 600124,615422) heterogeneous nucl ( 341) 1276 135.8 1.2e-31
XP_016867599 (OMIM: 600124,615422) PREDICTED: hete ( 341) 1276 135.8 1.2e-31
XP_005249786 (OMIM: 600124,615422) PREDICTED: hete ( 353) 1276 135.9 1.2e-31
NP_112533 (OMIM: 600124,615422) heterogeneous nucl ( 353) 1276 135.9 1.2e-31
NP_006796 (OMIM: 609409) heterogeneous nuclear rib ( 305) 1021 111.4 2.4e-24
NP_112737 (OMIM: 601324) heterogeneous nuclear rib ( 336) 658 76.9 6.5e-14
NP_112556 (OMIM: 602688) heterogeneous nuclear rib ( 332) 655 76.6 7.9e-14
NP_112738 (OMIM: 601324) heterogeneous nuclear rib ( 355) 651 76.3 1.1e-13
NP_112740 (OMIM: 607137,609115) heterogeneous nucl ( 420) 648 76.1 1.4e-13
NP_004490 (OMIM: 602688) heterogeneous nuclear rib ( 285) 590 70.3 5.4e-12
XP_005257071 (OMIM: 607897) PREDICTED: RNA-binding ( 346) 577 69.2 1.4e-11
XP_005257072 (OMIM: 607897) PREDICTED: RNA-binding ( 346) 577 69.2 1.4e-11
NP_001309179 (OMIM: 607897) RNA-binding protein Mu ( 324) 567 68.2 2.6e-11
NP_001003810 (OMIM: 601324) heterogeneous nuclear ( 287) 564 67.8 3e-11
NP_620412 (OMIM: 607897) RNA-binding protein Musas ( 328) 562 67.7 3.6e-11
NP_002129 (OMIM: 601324) heterogeneous nuclear rib ( 306) 557 67.2 4.9e-11
XP_011536664 (OMIM: 603328) PREDICTED: RNA-binding ( 343) 551 66.7 7.7e-11
NP_001193929 (OMIM: 607137,609115) heterogeneous n ( 363) 550 66.7 8.4e-11
XP_011536665 (OMIM: 603328) PREDICTED: RNA-binding ( 332) 548 66.4 9.2e-11
XP_006719466 (OMIM: 603328) PREDICTED: RNA-binding ( 351) 541 65.8 1.5e-10
XP_011536663 (OMIM: 603328) PREDICTED: RNA-binding ( 362) 541 65.8 1.5e-10
NP_002433 (OMIM: 603328) RNA-binding protein Musas ( 362) 541 65.8 1.5e-10
NP_001309180 (OMIM: 607897) RNA-binding protein Mu ( 255) 535 65.0 1.9e-10
XP_016879637 (OMIM: 607897) PREDICTED: RNA-binding ( 295) 535 65.1 2.1e-10
NP_733839 (OMIM: 607897) RNA-binding protein Musas ( 251) 531 64.6 2.5e-10
XP_011522588 (OMIM: 607897) PREDICTED: RNA-binding ( 242) 301 42.6 0.00098
XP_016879638 (OMIM: 607897) PREDICTED: RNA-binding ( 259) 301 42.7 0.001
XP_016880670 (OMIM: 601574,612237) PREDICTED: TATA ( 323) 301 42.8 0.0011
XP_011523617 (OMIM: 601574,612237) PREDICTED: TATA ( 501) 301 43.2 0.0014
NP_003478 (OMIM: 601574,612237) TATA-binding prote ( 589) 301 43.3 0.0015
NP_631961 (OMIM: 601574,612237) TATA-binding prote ( 592) 301 43.3 0.0015
XP_016882071 (OMIM: 607430) PREDICTED: DAZ-associa ( 327) 293 42.1 0.0019
XP_011526209 (OMIM: 607430) PREDICTED: DAZ-associa ( 548) 294 42.6 0.0023
XP_011526208 (OMIM: 607430) PREDICTED: DAZ-associa ( 549) 294 42.6 0.0023
XP_011526210 (OMIM: 607430) PREDICTED: DAZ-associa ( 521) 293 42.5 0.0024
XP_011526211 (OMIM: 607430) PREDICTED: DAZ-associa ( 521) 293 42.5 0.0024
XP_011526207 (OMIM: 607430) PREDICTED: DAZ-associa ( 549) 293 42.5 0.0024
XP_011526206 (OMIM: 607430) PREDICTED: DAZ-associa ( 550) 293 42.5 0.0024
XP_016879636 (OMIM: 607897) PREDICTED: RNA-binding ( 315) 289 41.7 0.0024
>>NP_002127 (OMIM: 164017,615424,615426) heterogeneous n (320 aa)
initn: 2211 init1: 2211 opt: 2211 Z-score: 1171.2 bits: 224.9 E(85289): 1.7e-58
Smith-Waterman score: 2211; 100.0% identity (100.0% similar) in 320 aa overlap (1-320:1-320)
10 20 30 40 50 60
pF1KB8 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPR
250 260 270 280 290 300
310 320
pF1KB8 NQGGYGGSSSSSSYGSGRRF
::::::::::::::::::::
NP_002 NQGGYGGSSSSSSYGSGRRF
310 320
>>NP_112420 (OMIM: 164017,615424,615426) heterogeneous n (372 aa)
initn: 2277 init1: 1752 opt: 1823 Z-score: 970.7 bits: 188.1 E(85289): 2.5e-47
Smith-Waterman score: 1962; 85.2% identity (85.2% similar) in 352 aa overlap (1-300:1-352)
10 20 30 40 50 60
pF1KB8 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS
190 200 210 220 230 240
250
pF1KB8 GDGYNGFGNDG-------------------------------------------------
:::::::::::
NP_112 GDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGG
250 260 270 280 290 300
260 270 280 290 300
pF1KB8 ---SNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGS
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 GSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGS
310 320 330 340 350 360
310 320
pF1KB8 SSSSSYGSGRRF
NP_112 SSSSSYGSGRRF
370
>>XP_005268883 (OMIM: 164017,615424,615426) PREDICTED: h (372 aa)
initn: 2277 init1: 1752 opt: 1823 Z-score: 970.7 bits: 188.1 E(85289): 2.5e-47
Smith-Waterman score: 1962; 85.2% identity (85.2% similar) in 352 aa overlap (1-300:1-352)
10 20 30 40 50 60
pF1KB8 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS
190 200 210 220 230 240
250
pF1KB8 GDGYNGFGNDG-------------------------------------------------
:::::::::::
XP_005 GDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGG
250 260 270 280 290 300
260 270 280 290 300
pF1KB8 ---SNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGS
:::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGS
310 320 330 340 350 360
310 320
pF1KB8 SSSSSYGSGRRF
XP_005 SSSSSYGSGRRF
370
>>XP_016874740 (OMIM: 164017,615424,615426) PREDICTED: h (295 aa)
initn: 1857 init1: 1554 opt: 1629 Z-score: 871.6 bits: 169.4 E(85289): 8.3e-42
Smith-Waterman score: 1960; 92.2% identity (92.2% similar) in 320 aa overlap (1-320:1-295)
10 20 30 40 50 60
pF1KB8 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS
::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRG--------------
190 200 210 220
250 260 270 280 290 300
pF1KB8 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPR
:::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 -----------SNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPR
230 240 250 260 270
310 320
pF1KB8 NQGGYGGSSSSSSYGSGRRF
::::::::::::::::::::
XP_016 NQGGYGGSSSSSSYGSGRRF
280 290
>>NP_001317180 (OMIM: 605372) heterogeneous nuclear ribo (331 aa)
initn: 1451 init1: 1296 opt: 1626 Z-score: 869.6 bits: 169.2 E(85289): 1.1e-41
Smith-Waterman score: 1629; 76.9% identity (89.5% similar) in 324 aa overlap (3-320:24-331)
10 20 30
pF1KB8 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGT
....:::::::::::::::::::::.::: :::.:::
NP_001 MEVKPPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB8 LTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPG
::::::::::.::::::::::::. :::::::: :::::::::::::::::::::: .::
NP_001 LTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPG
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB8 AHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV
:::::::::::::::::::..::::::.:::::.::.: :: ::::::::::::::::.:
NP_001 AHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB8 DKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSG-SGNFGGGRGGGFGGND-NFG
::::.:::::.:::::::.:::::::: ::.: ::::.: :::: : :::.:::. :::
NP_001 DKIVVQKYHTINGHNCEVKKALSKQEMQSAGS-QRGRGGGSGNFMG-RGGNFGGGGGNFG
190 200 210 220 230
220 230 240 250 260 270
pF1KB8 RGGNFSGRGGFGGSRGG--GGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQS-SNFG
:::::.::::.::. :: :.:::. ::::::.:: :.::::.:::::::..:. ::.:
NP_001 RGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDG-NYGGGGNYNDFGNYSGQQQSNYG
240 250 260 270 280 290
280 290 300 310 320
pF1KB8 PMKGGNFGGRSSG-PYGGGGQYFAKPRNQGGYGGSSSSSSYGSGRRF
:::::.::::::: ::::: ::....:..::: :::
NP_001 PMKGGSFGGRSSGSPYGGG------------YGSGGGSGGYGS-RRF
300 310 320 330
>>NP_001317179 (OMIM: 605372) heterogeneous nuclear ribo (331 aa)
initn: 1451 init1: 1296 opt: 1626 Z-score: 869.6 bits: 169.2 E(85289): 1.1e-41
Smith-Waterman score: 1629; 76.9% identity (89.5% similar) in 324 aa overlap (3-320:24-331)
10 20 30
pF1KB8 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGT
....:::::::::::::::::::::.::: :::.:::
NP_001 MEVKPPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB8 LTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPG
::::::::::.::::::::::::. :::::::: :::::::::::::::::::::: .::
NP_001 LTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPG
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB8 AHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV
:::::::::::::::::::..::::::.:::::.::.: :: ::::::::::::::::.:
NP_001 AHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB8 DKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSG-SGNFGGGRGGGFGGND-NFG
::::.:::::.:::::::.:::::::: ::.: ::::.: :::: : :::.:::. :::
NP_001 DKIVVQKYHTINGHNCEVKKALSKQEMQSAGS-QRGRGGGSGNFMG-RGGNFGGGGGNFG
190 200 210 220 230
220 230 240 250 260 270
pF1KB8 RGGNFSGRGGFGGSRGG--GGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQS-SNFG
:::::.::::.::. :: :.:::. ::::::.:: :.::::.:::::::..:. ::.:
NP_001 RGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDG-NYGGGGNYNDFGNYSGQQQSNYG
240 250 260 270 280 290
280 290 300 310 320
pF1KB8 PMKGGNFGGRSSG-PYGGGGQYFAKPRNQGGYGGSSSSSSYGSGRRF
:::::.::::::: ::::: ::....:..::: :::
NP_001 PMKGGSFGGRSSGSPYGGG------------YGSGGGSGGYGS-RRF
300 310 320 330
>>NP_001317177 (OMIM: 605372) heterogeneous nuclear ribo (356 aa)
initn: 1463 init1: 1288 opt: 1512 Z-score: 810.6 bits: 158.4 E(85289): 2.1e-38
Smith-Waterman score: 1536; 69.9% identity (83.8% similar) in 345 aa overlap (3-317:2-341)
10 20 30 40 50 60
pF1KB8 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
....:::::::::::::::::::::.::: :::.:::::::::::::.::::::::::
NP_001 MEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFV
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
::. :::::::: :::::::::::::::::::::: .:::::::::::::::::::::..
NP_001 TYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYN
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
::::::.:::::.::.: :: ::::::::::::::::.:::::.:::::.:::::::.::
NP_001 LRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA
120 130 140 150 160 170
190 200 210 220 230
pF1KB8 LSKQEMASASSSQRGRSG-SGNFGGGRGGGFGGND-NFGRGGNFSGRGGFGGSRGG--GG
:::::: ::.: ::::.: :::: : :::.:::. ::::::::.::::.::. :: :.
NP_001 LSKQEMQSAGS-QRGRGGGSGNFMG-RGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGS
180 190 200 210 220 230
240 250 260 270 280
pF1KB8 YGGSGDGYNGFGNDGSNFGGGGSYNDFGNYN-------NQSSNFGP-------MKGGNFG
:::. ::::::.::.:.::: .:.. :.:. ::....: .:::::
NP_001 YGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFG
240 250 260 270 280 290
290 300 310 320
pF1KB8 GRSSGPYGGGGQY--FAK----------PRNQGGYGGSSSSSSYGSGRRF
: : :::::.: :.. : . :..:: ::.: ::.:
NP_001 G---GNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYGSR
300 310 320 330 340 350
NP_001 RF
>>NP_001317176 (OMIM: 605372) heterogeneous nuclear ribo (356 aa)
initn: 1463 init1: 1288 opt: 1512 Z-score: 810.6 bits: 158.4 E(85289): 2.1e-38
Smith-Waterman score: 1536; 69.9% identity (83.8% similar) in 345 aa overlap (3-317:2-341)
10 20 30 40 50 60
pF1KB8 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
....:::::::::::::::::::::.::: :::.:::::::::::::.::::::::::
NP_001 MEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFV
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
::. :::::::: :::::::::::::::::::::: .:::::::::::::::::::::..
NP_001 TYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYN
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
::::::.:::::.::.: :: ::::::::::::::::.:::::.:::::.:::::::.::
NP_001 LRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA
120 130 140 150 160 170
190 200 210 220 230
pF1KB8 LSKQEMASASSSQRGRSG-SGNFGGGRGGGFGGND-NFGRGGNFSGRGGFGGSRGG--GG
:::::: ::.: ::::.: :::: : :::.:::. ::::::::.::::.::. :: :.
NP_001 LSKQEMQSAGS-QRGRGGGSGNFMG-RGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGS
180 190 200 210 220 230
240 250 260 270 280
pF1KB8 YGGSGDGYNGFGNDGSNFGGGGSYNDFGNYN-------NQSSNFGP-------MKGGNFG
:::. ::::::.::.:.::: .:.. :.:. ::....: .:::::
NP_001 YGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFG
240 250 260 270 280 290
290 300 310 320
pF1KB8 GRSSGPYGGGGQY--FAK----------PRNQGGYGGSSSSSSYGSGRRF
: : :::::.: :.. : . :..:: ::.: ::.:
NP_001 G---GNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYGSR
300 310 320 330 340 350
NP_001 RF
>>NP_919223 (OMIM: 605372) heterogeneous nuclear ribonuc (378 aa)
initn: 1463 init1: 1288 opt: 1512 Z-score: 810.4 bits: 158.4 E(85289): 2.1e-38
Smith-Waterman score: 1536; 69.9% identity (83.8% similar) in 345 aa overlap (3-317:24-363)
10 20 30
pF1KB8 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGT
....:::::::::::::::::::::.::: :::.:::
NP_919 MEVKPPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB8 LTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPG
::::::::::.::::::::::::. :::::::: :::::::::::::::::::::: .::
NP_919 LTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPG
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB8 AHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV
:::::::::::::::::::..::::::.:::::.::.: :: ::::::::::::::::.:
NP_919 AHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB8 DKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSG-SGNFGGGRGGGFGGND-NFG
::::.:::::.:::::::.:::::::: ::.: ::::.: :::: : :::.:::. :::
NP_919 DKIVVQKYHTINGHNCEVKKALSKQEMQSAGS-QRGRGGGSGNFMG-RGGNFGGGGGNFG
190 200 210 220 230
220 230 240 250 260
pF1KB8 RGGNFSGRGGFGGSRGG--GGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYN-------N
:::::.::::.::. :: :.:::. ::::::.::.:.::: .:.. :.:. :
NP_919 RGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGN
240 250 260 270 280 290
270 280 290 300
pF1KB8 QSSNFGP-------MKGGNFGGRSSGPYGGGGQY--FAK----------PRNQGGYGGSS
:....: .:::::: : :::::.: :.. : . :..:: :
NP_919 QGGGYGGGGGYDGYNEGGNFGG---GNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRS
300 310 320 330 340 350
310 320
pF1KB8 SSSSYGSGRRF
:.: ::.:
NP_919 SGSPYGGGYGSGGGSGGYGSRRF
360 370
>>NP_001317178 (OMIM: 605372) heterogeneous nuclear ribo (378 aa)
initn: 1463 init1: 1288 opt: 1512 Z-score: 810.4 bits: 158.4 E(85289): 2.1e-38
Smith-Waterman score: 1536; 69.9% identity (83.8% similar) in 345 aa overlap (3-317:24-363)
10 20 30
pF1KB8 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGT
....:::::::::::::::::::::.::: :::.:::
NP_001 MEVKPPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB8 LTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPG
::::::::::.::::::::::::. :::::::: :::::::::::::::::::::: .::
NP_001 LTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPG
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB8 AHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV
:::::::::::::::::::..::::::.:::::.::.: :: ::::::::::::::::.:
NP_001 AHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB8 DKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSG-SGNFGGGRGGGFGGND-NFG
::::.:::::.:::::::.:::::::: ::.: ::::.: :::: : :::.:::. :::
NP_001 DKIVVQKYHTINGHNCEVKKALSKQEMQSAGS-QRGRGGGSGNFMG-RGGNFGGGGGNFG
190 200 210 220 230
220 230 240 250 260
pF1KB8 RGGNFSGRGGFGGSRGG--GGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYN-------N
:::::.::::.::. :: :.:::. ::::::.::.:.::: .:.. :.:. :
NP_001 RGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGN
240 250 260 270 280 290
270 280 290 300
pF1KB8 QSSNFGP-------MKGGNFGGRSSGPYGGGGQY--FAK----------PRNQGGYGGSS
:....: .:::::: : :::::.: :.. : . :..:: :
NP_001 QGGGYGGGGGYDGYNEGGNFGG---GNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRS
300 310 320 330 340 350
310 320
pF1KB8 SSSSYGSGRRF
:.: ::.:
NP_001 SGSPYGGGYGSGGGSGGYGSRRF
360 370
320 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 09:43:04 2016 done: Fri Nov 4 09:43:06 2016
Total Scan time: 6.130 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]