FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8109, 153 aa
  1>>>pF1KB8109 153 - 153 aa - 153 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2196+/-0.000539; mu= 12.7757+/- 0.033
 mean_var=57.3603+/-11.127, 0's: 0 Z-trim(113.0): 2  B-trim: 48 in 1/54
 Lambda= 0.169344
 statistics sampled from 13651 (13652) to 13651 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.784), E-opt: 0.2 (0.419), width:  16
 Scan time:  1.140

The best scores are:                                      opt bits E(32554)
CCDS9295.2 SAP18 gene_id:10284|Hs108|chr13         ( 172) 1024 257.3 3.1e-69


>>CCDS9295.2 SAP18 gene_id:10284|Hs108|chr13              (172 aa)
 initn: 1024 init1: 1024 opt: 1024  Z-score: 1356.5  bits: 257.3 E(32554): 3.1e-69
Smith-Waterman score: 1024; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:20-172)

                                  10        20        30        40 
pF1KB8                    MAVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHH
                          :::::::::::::::::::::::::::::::::::::::::
CCDS92 MLAAGVGGQGERLAGRRRKMAVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHH
               10        20        30        40        50        60

              50        60        70        80        90       100 
pF1KB8 RMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 RMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGY
               70        80        90       100       110       120

             110       120       130       140       150   
pF1KB8 RVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIAITPPNRAPPPSGRMRPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 RVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIAITPPNRAPPPSGRMRPY
              130       140       150       160       170  




153 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:35:28 2016 done: Fri Nov  4 09:35:28 2016
 Total Scan time:  1.140 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]