Result of FASTA (ccds) for
pF1KB8107
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8107, 222 aa
1>>>pF1KB8107 222 - 222 aa - 222 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.8042+/-0.000727; mu= 8.7929+/- 0.044
mean_var=110.5962+/-21.965, 0's: 0 Z-trim(112.4): 13 B-trim: 0 in 0/52
Lambda= 0.121956
statistics sampled from 13149 (13162) to 13149 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.404), width: 16
Scan time: 1.980
The best scores are: opt bits E(32554)
CCDS33236.1 CHMP3 gene_id:51652|Hs108|chr2 ( 222) 1385 253.4 8.4e-68
CCDS56128.1 CHMP3 gene_id:100526767|Hs108|chr2 ( 251) 1282 235.3 2.7e-62
CCDS42707.1 CHMP3 gene_id:51652|Hs108|chr2 ( 156) 957 178.0 2.9e-45
CCDS54375.1 CHMP3 gene_id:51652|Hs108|chr2 ( 182) 688 130.7 5.9e-31
CCDS2918.1 CHMP2B gene_id:25978|Hs108|chr3 ( 213) 311 64.4 6.2e-11
CCDS12986.1 CHMP2A gene_id:27243|Hs108|chr19 ( 222) 308 63.9 9.3e-11
>>CCDS33236.1 CHMP3 gene_id:51652|Hs108|chr2 (222 aa)
initn: 1385 init1: 1385 opt: 1385 Z-score: 1330.7 bits: 253.4 E(32554): 8.4e-68
Smith-Waterman score: 1385; 100.0% identity (100.0% similar) in 222 aa overlap (1-222:1-222)
10 20 30 40 50 60
pF1KB8 MGLFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MGLFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 IVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 PEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKA
130 140 150 160 170 180
190 200 210 220
pF1KB8 PSKVTDALPEPEPPGAMAASEDEEEEEEALEAMQSRLATLRS
::::::::::::::::::::::::::::::::::::::::::
CCDS33 PSKVTDALPEPEPPGAMAASEDEEEEEEALEAMQSRLATLRS
190 200 210 220
>>CCDS56128.1 CHMP3 gene_id:100526767|Hs108|chr2 (251 aa)
initn: 1282 init1: 1282 opt: 1282 Z-score: 1232.0 bits: 235.3 E(32554): 2.7e-62
Smith-Waterman score: 1282; 100.0% identity (100.0% similar) in 207 aa overlap (16-222:45-251)
10 20 30 40
pF1KB8 MGLFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVK
::::::::::::::::::::::::::::::
CCDS56 SESVSSTNFSGEMHFYELVEDTKDGIWLVQVNEWSLKIRKEMRVVDRQIRDIQREEEKVK
20 30 40 50 60 70
50 60 70 80 90 100
pF1KB8 RSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 RSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQ
80 90 100 110 120 130
110 120 130 140 150 160
pF1KB8 KSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 KSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEI
140 150 160 170 180 190
170 180 190 200 210 220
pF1KB8 DRILFEITAGALGKAPSKVTDALPEPEPPGAMAASEDEEEEEEALEAMQSRLATLRS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 DRILFEITAGALGKAPSKVTDALPEPEPPGAMAASEDEEEEEEALEAMQSRLATLRS
200 210 220 230 240 250
>>CCDS42707.1 CHMP3 gene_id:51652|Hs108|chr2 (156 aa)
initn: 957 init1: 957 opt: 957 Z-score: 926.0 bits: 178.0 E(32554): 2.9e-45
Smith-Waterman score: 957; 100.0% identity (100.0% similar) in 156 aa overlap (67-222:1-156)
40 50 60 70 80 90
pF1KB8 IQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLA
::::::::::::::::::::::::::::::
CCDS42 MIRSRKAVSKLYASKAHMNSVLMGMKNQLA
10 20 30
100 110 120 130 140 150
pF1KB8 VLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEE
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB8 MEEEAEMEIDRILFEITAGALGKAPSKVTDALPEPEPPGAMAASEDEEEEEEALEAMQSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MEEEAEMEIDRILFEITAGALGKAPSKVTDALPEPEPPGAMAASEDEEEEEEALEAMQSR
100 110 120 130 140 150
220
pF1KB8 LATLRS
::::::
CCDS42 LATLRS
>>CCDS54375.1 CHMP3 gene_id:51652|Hs108|chr2 (182 aa)
initn: 688 init1: 688 opt: 688 Z-score: 669.2 bits: 130.7 E(32554): 5.9e-31
Smith-Waterman score: 1057; 82.0% identity (82.0% similar) in 222 aa overlap (1-222:1-182)
10 20 30 40 50 60
pF1KB8 MGLFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MGLFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 IVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKI
::::::::::: :::::::::
CCDS54 IVLAKEMIRSR----------------------------------------KAMQSLVKI
70 80
130 140 150 160 170 180
pF1KB8 PEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKA
90 100 110 120 130 140
190 200 210 220
pF1KB8 PSKVTDALPEPEPPGAMAASEDEEEEEEALEAMQSRLATLRS
::::::::::::::::::::::::::::::::::::::::::
CCDS54 PSKVTDALPEPEPPGAMAASEDEEEEEEALEAMQSRLATLRS
150 160 170 180
>>CCDS2918.1 CHMP2B gene_id:25978|Hs108|chr3 (213 aa)
initn: 315 init1: 241 opt: 311 Z-score: 309.7 bits: 64.4 E(32554): 6.2e-11
Smith-Waterman score: 311; 27.5% identity (69.1% similar) in 207 aa overlap (8-210:6-210)
10 20 30 40 50 60
pF1KB8 MGLFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVC
..: ....: . ..: .:.. :. ....:.... .: :: :.:..:
CCDS29 MASLFKKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEAC
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 IVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKI
::::.... :: .. .: .....:. : . . ...::... ....:.:... .
CCDS29 KVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDP
60 70 80 90 100 110
130 140 150 160 170
pF1KB8 PEIQATMRELSKEMMKAGIIEEMLEDT----FESMDDQEEMEEEAEMEIDRILFEITAGA
. ::....:: :: . :::..:: :.. ::.:: .. ... .:.: .::. :
CCDS29 QKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEIS-GK
120 130 140 150 160 170
180 190 200 210 220
pF1KB8 LGKAPSKVTDALPEPEPPGAMAASEDEEEEEEALEAMQSRLATLRS
..:::: .. .:: : ..:. :.. .::
CCDS29 MAKAPS-AARSLPSASTSKATISDEEIERQLKALGVD
180 190 200 210
>>CCDS12986.1 CHMP2A gene_id:27243|Hs108|chr19 (222 aa)
initn: 288 init1: 288 opt: 308 Z-score: 306.6 bits: 63.9 E(32554): 9.3e-11
Smith-Waterman score: 308; 27.4% identity (63.0% similar) in 219 aa overlap (3-220:4-212)
10 20 30 40 50
pF1KB8 MGLFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDV
:::. .: :.::. . . . . :: .::. . .. .:.:. ..: ::.:: :.
CCDS12 MDLLFGR--RKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDA
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 CIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVK
..::...:.:. : :. .:....: . ... . .: ... :..: .:. .:
CCDS12 VRIMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 IPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGK
.:.:: : :. .. . :::..:.... .:: :::.. ....: : ::
CCDS12 LPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDE-----LGL
120 130 140 150 160 170
180 190 200 210 220
pF1KB8 APSKVTDALPE-PEPPGAMAASEDEEEEEEALEAMQSRLATLRS
. .:: : . : :..... .. : : :. . : :
CCDS12 S---LTDELSNLPSTGGSLSVAAGGKKAEAAASALADADADLEERLKNLRRD
180 190 200 210 220
222 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 09:33:09 2016 done: Fri Nov 4 09:33:09 2016
Total Scan time: 1.980 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]