Result of FASTA (ccds) for
pF1KB8006
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8006, 773 aa
1>>>pF1KB8006 773 - 773 aa - 773 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.1852+/-0.000749; mu= 12.8074+/- 0.046
mean_var=118.8898+/-23.848, 0's: 0 Z-trim(112.7): 23 B-trim: 0 in 0/51
Lambda= 0.117626
statistics sampled from 13379 (13400) to 13379 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.749), E-opt: 0.2 (0.412), width: 16
Scan time: 3.200
The best scores are: opt bits E(32554)
CCDS13773.1 DGCR8 gene_id:54487|Hs108|chr22 ( 773) 5195 892.6 0
CCDS54501.1 DGCR8 gene_id:54487|Hs108|chr22 ( 740) 3640 628.7 1e-179
>>CCDS13773.1 DGCR8 gene_id:54487|Hs108|chr22 (773 aa)
initn: 5195 init1: 5195 opt: 5195 Z-score: 4765.8 bits: 892.6 E(32554): 0
Smith-Waterman score: 5195; 100.0% identity (100.0% similar) in 773 aa overlap (1-773:1-773)
10 20 30 40 50 60
pF1KB8 METDESPSPLPCGPAGEAVMESRARPFQALPREQSPPPPLQTSSGAEVMDVGSGGDGQSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 METDESPSPLPCGPAGEAVMESRARPFQALPREQSPPPPLQTSSGAEVMDVGSGGDGQSE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LPAEDPFNFYGASLLSKGSFSKGRLLIDPNCSGHSPRTARHAPAVRKFSPDLKLLKDVKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LPAEDPFNFYGASLLSKGSFSKGRLLIDPNCSGHSPRTARHAPAVRKFSPDLKLLKDVKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 SVSFTESCRSKDRKVLYTGAERDVRAECGLLLSPVSGDVHACPFGGSVGDGVGIGGESAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SVSFTESCRSKDRKVLYTGAERDVRAECGLLLSPVSGDVHACPFGGSVGDGVGIGGESAD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 KKDEENELDQEKRVEYAVLDELEDFTDNLELDEEGAGGFTAKAIVQRDRVDEEALNFPYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KKDEENELDQEKRVEYAVLDELEDFTDNLELDEEGAGGFTAKAIVQRDRVDEEALNFPYE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 DDFDNDVDALLEEGLCAPKKRRTEEKYGGDSDHPSDGETSVQPMMTKIKTVLKSRGRPPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DDFDNDVDALLEEGLCAPKKRRTEEKYGGDSDHPSDGETSVQPMMTKIKTVLKSRGRPPT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 EPLPDGWIMTFHNSGVPVYLHRESRVVTWSRPYFLGTGSIRKHDPPLSSIPCLHYKKMKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EPLPDGWIMTFHNSGVPVYLHRESRVVTWSRPYFLGTGSIRKHDPPLSSIPCLHYKKMKD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 NEEREQSSDLTPSGDVSPVKPLSRSAELEFPLDEPDSMGADPGPPDEKDPLGAEAAPGAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NEEREQSSDLTPSGDVSPVKPLSRSAELEFPLDEPDSMGADPGPPDEKDPLGAEAAPGAL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 GQVKAKVEVCKDESVDLEEFRSYLEKRFDFEQVTVKKFRTWAERRQFNREMKRKQAESER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GQVKAKVEVCKDESVDLEEFRSYLEKRFDFEQVTVKKFRTWAERRQFNREMKRKQAESER
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 PILPANQKLITLSVQDAPTKKEFVINPNGKSEVCILHEYMQRVLKVRPVYNFFECENPSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PILPANQKLITLSVQDAPTKKEFVINPNGKSEVCILHEYMQRVLKVRPVYNFFECENPSE
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB8 PFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPDFVKQTSEEKPKDSEELEYFNH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPDFVKQTSEEKPKDSEELEYFNH
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB8 ISIEDSRVYELTSKAGLLSPYQILHECLKRNHGMGDTSIKFEVVPGKNQKSEYVMACGKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ISIEDSRVYELTSKAGLLSPYQILHECLKRNHGMGDTSIKFEVVPGKNQKSEYVMACGKH
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB8 TVRGWCKNKRVGKQLASQKILQLLHPHVKNWGSLLRMYGRESSKMVKQETSDKSVIELQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TVRGWCKNKRVGKQLASQKILQLLHPHVKNWGSLLRMYGRESSKMVKQETSDKSVIELQQ
670 680 690 700 710 720
730 740 750 760 770
pF1KB8 YAKKNKPNLHILSKLQEEMKRLAEEREETRKKPKMSIVASAQPGGEPLCTVDV
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 YAKKNKPNLHILSKLQEEMKRLAEEREETRKKPKMSIVASAQPGGEPLCTVDV
730 740 750 760 770
>>CCDS54501.1 DGCR8 gene_id:54487|Hs108|chr22 (740 aa)
initn: 4975 init1: 3640 opt: 3640 Z-score: 3340.0 bits: 628.7 E(32554): 1e-179
Smith-Waterman score: 4913; 95.7% identity (95.7% similar) in 773 aa overlap (1-773:1-740)
10 20 30 40 50 60
pF1KB8 METDESPSPLPCGPAGEAVMESRARPFQALPREQSPPPPLQTSSGAEVMDVGSGGDGQSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 METDESPSPLPCGPAGEAVMESRARPFQALPREQSPPPPLQTSSGAEVMDVGSGGDGQSE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LPAEDPFNFYGASLLSKGSFSKGRLLIDPNCSGHSPRTARHAPAVRKFSPDLKLLKDVKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LPAEDPFNFYGASLLSKGSFSKGRLLIDPNCSGHSPRTARHAPAVRKFSPDLKLLKDVKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 SVSFTESCRSKDRKVLYTGAERDVRAECGLLLSPVSGDVHACPFGGSVGDGVGIGGESAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SVSFTESCRSKDRKVLYTGAERDVRAECGLLLSPVSGDVHACPFGGSVGDGVGIGGESAD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 KKDEENELDQEKRVEYAVLDELEDFTDNLELDEEGAGGFTAKAIVQRDRVDEEALNFPYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KKDEENELDQEKRVEYAVLDELEDFTDNLELDEEGAGGFTAKAIVQRDRVDEEALNFPYE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 DDFDNDVDALLEEGLCAPKKRRTEEKYGGDSDHPSDGETSVQPMMTKIKTVLKSRGRPPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DDFDNDVDALLEEGLCAPKKRRTEEKYGGDSDHPSDGETSVQPMMTKIKTVLKSRGRPPT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 EPLPDGWIMTFHNSGVPVYLHRESRVVTWSRPYFLGTGSIRKHDPPLSSIPCLHYKKMKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EPLPDGWIMTFHNSGVPVYLHRESRVVTWSRPYFLGTGSIRKHDPPLSSIPCLHYKKMKD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 NEEREQSSDLTPSGDVSPVKPLSRSAELEFPLDEPDSMGADPGPPDEKDPLGAEAAPGAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 NEEREQSSDLTPSGDVSPVKPLSRSAELEFPLDEPDSMGADPGPPDEKDPLGAEAAPGAL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 GQVKAKVEVCKDESVDLEEFRSYLEKRFDFEQVTVKKFRTWAERRQFNREMKRKQAESER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GQVKAKVEVCKDESVDLEEFRSYLEKRFDFEQVTVKKFRTWAERRQFNREMKRKQAESER
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 PILPANQKLITLSVQDAPTKKEFVINPNGKSEVCILHEYMQRVLKVRPVYNFFECENPSE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PILPANQKLITLSVQDAPTKKEFVINPNGKSEVCILHEYMQRVLKVRPVYNFFEC-----
490 500 510 520 530
550 560 570 580 590 600
pF1KB8 PFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPDFVKQTSEEKPKDSEELEYFNH
::::::::::::::::::::::::::::::::
CCDS54 ----------------------------ARATLEILIPDFVKQTSEEKPKDSEELEYFNH
540 550 560
610 620 630 640 650 660
pF1KB8 ISIEDSRVYELTSKAGLLSPYQILHECLKRNHGMGDTSIKFEVVPGKNQKSEYVMACGKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ISIEDSRVYELTSKAGLLSPYQILHECLKRNHGMGDTSIKFEVVPGKNQKSEYVMACGKH
570 580 590 600 610 620
670 680 690 700 710 720
pF1KB8 TVRGWCKNKRVGKQLASQKILQLLHPHVKNWGSLLRMYGRESSKMVKQETSDKSVIELQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TVRGWCKNKRVGKQLASQKILQLLHPHVKNWGSLLRMYGRESSKMVKQETSDKSVIELQQ
630 640 650 660 670 680
730 740 750 760 770
pF1KB8 YAKKNKPNLHILSKLQEEMKRLAEEREETRKKPKMSIVASAQPGGEPLCTVDV
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 YAKKNKPNLHILSKLQEEMKRLAEEREETRKKPKMSIVASAQPGGEPLCTVDV
690 700 710 720 730 740
773 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 23:14:08 2016 done: Wed Nov 2 23:14:09 2016
Total Scan time: 3.200 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]