FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8002, 376 aa
  1>>>pF1KB8002 376 - 376 aa - 376 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7404+/-0.000865; mu= 6.4164+/- 0.052
 mean_var=143.6660+/-28.605, 0's: 0 Z-trim(110.9): 16  B-trim: 7 in 1/50
 Lambda= 0.107003
 statistics sampled from 11976 (11987) to 11976 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.716), E-opt: 0.2 (0.368), width:  16
 Scan time:  2.960

The best scores are:                                      opt bits E(32554)
CCDS9375.1 WBP4 gene_id:11193|Hs108|chr13          ( 376) 2490 395.7 3.5e-110


>>CCDS9375.1 WBP4 gene_id:11193|Hs108|chr13               (376 aa)
 initn: 2490 init1: 2490 opt: 2490  Z-score: 2091.6  bits: 395.7 E(32554): 3.5e-110
Smith-Waterman score: 2490; 100.0% identity (100.0% similar) in 376 aa overlap (1-376:1-376)

               10        20        30        40        50        60
pF1KB8 MADYWKSQPKKFCDYCKCWIADNRPSVEFHERGKNHKENVAKRISEIKQKSLDKAKEEEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 MADYWKSQPKKFCDYCKCWIADNRPSVEFHERGKNHKENVAKRISEIKQKSLDKAKEEEK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 ASKEFAAMEAAALKAYQEDLKRLGLESEILEPSITPVTSTIPPTSTSNQQKEKKEKKKRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 ASKEFAAMEAAALKAYQEDLKRLGLESEILEPSITPVTSTIPPTSTSNQQKEKKEKKKRK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 KDPSKGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVKTVWVEGLSEDGFTY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 KDPSKGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVKTVWVEGLSEDGFTY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 YYNTETGESRWEKPDDFIPHTSDLPSSKVNENSLGTLDESKSSDSHSDSDGEQEAEEGGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 YYNTETGESRWEKPDDFIPHTSDLPSSKVNENSLGTLDESKSSDSHSDSDGEQEAEEGGV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 STETEKPKIKFKEKNKNSDGGSDPETQKEKSIQKQNSLGSNEEKSKTLKKSNPYGEWQEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 STETEKPKIKFKEKNKNSDGGSDPETQKEKSIQKQNSLGSNEEKSKTLKKSNPYGEWQEI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 KQEVESHEEVDLELPSTENEYVSTSEADGGGEPKVVFKEKTVTSLGVMADGVAPVFKKRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 KQEVESHEEVDLELPSTENEYVSTSEADGGGEPKVVFKEKTVTSLGVMADGVAPVFKKRR
              310       320       330       340       350       360

              370      
pF1KB8 TENGKSRNLRQRGDDQ
       ::::::::::::::::
CCDS93 TENGKSRNLRQRGDDQ
              370      




376 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:11:50 2016 done: Wed Nov  2 23:11:51 2016
 Total Scan time:  2.960 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]