FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8001, 265 aa
  1>>>pF1KB8001 265 - 265 aa - 265 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9987+/-0.000935; mu= 3.4648+/- 0.056
 mean_var=212.4223+/-43.435, 0's: 0 Z-trim(112.4): 56  B-trim: 0 in 0/51
 Lambda= 0.087998
 statistics sampled from 13084 (13133) to 13084 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.756), E-opt: 0.2 (0.403), width:  16
 Scan time:  1.600

The best scores are:                                      opt bits E(32554)
CCDS14309.1 PQBP1 gene_id:10084|Hs108|chrX         ( 265) 1833 244.8 4.5e-65
CCDS55412.1 PQBP1 gene_id:10084|Hs108|chrX         ( 170)  685 98.9 2.5e-21


>>CCDS14309.1 PQBP1 gene_id:10084|Hs108|chrX              (265 aa)
 initn: 1833 init1: 1833 opt: 1833  Z-score: 1281.7  bits: 244.8 E(32554): 4.5e-65
Smith-Waterman score: 1833; 100.0% identity (100.0% similar) in 265 aa overlap (1-265:1-265)

               10        20        30        40        50        60
pF1KB8 MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 HEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 HEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 REELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 REELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLF
              190       200       210       220       230       240

              250       260     
pF1KB8 QQRPYPSPGAVLRANAEASRTKQQD
       :::::::::::::::::::::::::
CCDS14 QQRPYPSPGAVLRANAEASRTKQQD
              250       260     

>>CCDS55412.1 PQBP1 gene_id:10084|Hs108|chrX              (170 aa)
 initn: 697 init1: 677 opt: 685  Z-score: 496.5  bits: 98.9 E(32554): 2.5e-21
Smith-Waterman score: 965; 64.2% identity (64.2% similar) in 265 aa overlap (1-265:1-170)

               10        20        30        40        50        60
pF1KB8 MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRLEGLPPSWYKVFDPSC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNADAEEKLDRSHDKSDRGHDKSDRS
       :::::::::::::::::::::::::::::::::::::                       
CCDS55 GLPYYWNADTDLVSWLSPHDPNSVVTKSAKKLRSSNA-----------------------
               70        80        90                              

              130       140       150       160       170       180
pF1KB8 HEKLDRGHDKSDRGHDKSDRDRERGYDKVDRERERDRERDRDRGYDKADREEGKERRHHR
                                                                   
CCDS55 ------------------------------------------------------------
                                                                   

              190       200       210       220       230       240
pF1KB8 REELAPYPKSKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLF
                   ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ------------AVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLF
                   100       110       120       130       140     

              250       260     
pF1KB8 QQRPYPSPGAVLRANAEASRTKQQD
       :::::::::::::::::::::::::
CCDS55 QQRPYPSPGAVLRANAEASRTKQQD
         150       160       170




265 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:10:46 2016 done: Wed Nov  2 23:10:46 2016
 Total Scan time:  1.600 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]