Result of FASTA (ccds) for
pF1KB7990
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7990, 326 aa
1>>>pF1KB7990 326 - 326 aa - 326 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.6692+/-0.000755; mu= 2.4330+/- 0.046
mean_var=185.8588+/-37.140, 0's: 0 Z-trim(116.5): 39 B-trim: 112 in 1/51
Lambda= 0.094077
statistics sampled from 17068 (17105) to 17068 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.82), E-opt: 0.2 (0.525), width: 16
Scan time: 3.090
The best scores are: opt bits E(32554)
CCDS1766.1 FOSL2 gene_id:2355|Hs108|chr2 ( 326) 2146 302.6 2.8e-82
CCDS9841.1 FOS gene_id:2353|Hs108|chr14 ( 380) 630 96.9 2.8e-20
CCDS8121.1 FOSL1 gene_id:8061|Hs108|chr11 ( 271) 487 77.4 1.5e-14
CCDS12664.1 FOSB gene_id:2354|Hs108|chr19 ( 338) 487 77.4 1.8e-14
>>CCDS1766.1 FOSL2 gene_id:2355|Hs108|chr2 (326 aa)
initn: 2146 init1: 2146 opt: 2146 Z-score: 1590.6 bits: 302.6 E(32554): 2.8e-82
Smith-Waterman score: 2146; 100.0% identity (100.0% similar) in 326 aa overlap (1-326:1-326)
10 20 30 40 50 60
pF1KB7 MYQDYPGNFDTSSRGSSGSPAHAESYSSGGGGQQKFRVDMPGSGSAFIPTINAITTSQDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 MYQDYPGNFDTSSRGSSGSPAHAESYSSGGGGQQKFRVDMPGSGSAFIPTINAITTSQDL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 QWMVQPTVITSMSNPYPRSHPYSPLPGLASVPGHMALPRPGVIKTIGTTVGRRRRDEQLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 QWMVQPTVITSMSNPYPRSHPYSPLPGLASVPGHMALPRPGVIKTIGTTVGRRRRDEQLS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PEEEEKRRIRRERNKLAAAKCRNRRRELTEKLQAETEELEEEKSGLQKEIAELQKEKEKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 PEEEEKRRIRRERNKLAAAKCRNRRRELTEKLQAETEELEEEKSGLQKEIAELQKEKEKL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 EFMLVAHGPVCKISPEERRSPPAPGLQPMRSGGGSVGAVVVKQEPLEEDSPSSSSAGLDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 EFMLVAHGPVCKISPEERRSPPAPGLQPMRSGGGSVGAVVVKQEPLEEDSPSSSSAGLDK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 AQRSVIKPISIAGGFYGEEPLHTPIVVTSTPAVTPGTSNLVFTYPSVLEQESPASPSESC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 AQRSVIKPISIAGGFYGEEPLHTPIVVTSTPAVTPGTSNLVFTYPSVLEQESPASPSESC
250 260 270 280 290 300
310 320
pF1KB7 SKAHRRSSSSGDQSSDSLNSPTLLAL
::::::::::::::::::::::::::
CCDS17 SKAHRRSSSSGDQSSDSLNSPTLLAL
310 320
>>CCDS9841.1 FOS gene_id:2353|Hs108|chr14 (380 aa)
initn: 703 init1: 560 opt: 630 Z-score: 477.6 bits: 96.9 E(32554): 2.8e-20
Smith-Waterman score: 771; 42.4% identity (64.6% similar) in 387 aa overlap (1-317:2-371)
10 20 30 40
pF1KB7 MYQDYPGNFD-TSSRGSSGSPA-------H--AESYSSGGG--GQQKFRVDMPGSGSAF
:.. . .... .::: ::.::: : :.:.:: :. . : : .:. :.. :
CCDS98 MMFSGFNADYEASSSRCSSASPAGDSLSYYHSPADSFSSMGSPVNAQDFCTDLAVSSANF
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 IPTINAITTSQDLQWMVQPTVITSMSNPYPRS-HPYSPLPGLASVPGHMALPRPGVIKTI
:::..::.:: ::::.:::....:.. :. ::.. .:. :. : : ::.::.
CCDS98 IPTVTAISTSPDLQWLVQPALVSSVAPSQTRAPHPFG-VPA----PSAGAYSRAGVVKTM
70 80 90 100 110
110 120 130 140 150 160
pF1KB7 ----GTTVGRRRRDEQLSPEEEEKRRIRRERNKLAAAKCRNRRRELTEKLQAETEELEEE
. ..::: . :::::::::::::::::::.:::::::::::::. :::::..::.:
CCDS98 TGGRAQSIGRRGKVEQLSPEEEEKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDE
120 130 140 150 160 170
170 180 190 200
pF1KB7 KSGLQKEIAELQKEKEKLEFMLVAHGPVCKIS-----PEERR--------------SP--
::.:: :::.: ::::::::.:.:: :.::: ::: .:
CCDS98 KSALQTEIANLLKEKEKLEFILAAHRPACKIPDDLGFPEEMSVASLDLTGGLPEVATPES
180 190 200 210 220 230
210 220 230 240
pF1KB7 -------------PAPGLQPMRSGGGSVGAVVVKQEPLEE-DSPSSSSAGLDKAQRSVIK
: :...:..: .... .: ::... :.:: . ... :::
CCDS98 EEAFTLPLLNDPEPKPSVEPVKS----ISSMELKTEPFDDFLFPASSRPSGSETARSV-P
240 250 260 270 280 290
250 260 270 280
pF1KB7 PISIAGGFYGE--EPLHT------PI----------VVTSTPAVTPGTSNLVFTYPSVLE
....:.::. ::::. :. ::: ::. : ::..:::::
CCDS98 DMDLSGSFYAADWEPLHSGSLGMGPMATELEPLCTPVVTCTPSCTAYTSSFVFTYP----
300 310 320 330 340
290 300 310 320
pF1KB7 QESPASPSESCSKAHRRSSSSGDQSSDSLNSPTLLAL
:. . :: :. :::..:::.. ::::
CCDS98 -EADSFPS--CAAAHRKGSSSNEPSSDSLSSPTLLAL
350 360 370 380
>>CCDS8121.1 FOSL1 gene_id:8061|Hs108|chr11 (271 aa)
initn: 546 init1: 413 opt: 487 Z-score: 374.8 bits: 77.4 E(32554): 1.5e-14
Smith-Waterman score: 766; 46.7% identity (65.7% similar) in 332 aa overlap (1-326:1-271)
10 20 30 40 50
pF1KB7 MYQDY--PGNFDTSSRGSSGSPAHAESYSSGGGGQQKFRVDMPGSGSAFIPTINAITTSQ
:..:. :: .... :. :.::. . ... .::::.. .:.::... ::
CCDS81 MFRDFGEPGP-SSGNGGGYGGPAQPPAAAQA--AQQKFHL---------VPSINTMSGSQ
10 20 30 40
60 70 80 90 100 110
pF1KB7 DLQWMVQPTVITSMSNPYPRSHP-YSPLPGLASVPGHMALPRPGVIKTIGTTVGRRRRD-
.::::::: . : : : ..: ::: : ::::::...: : :::
CCDS81 ELQWMVQPHFLGPSSYPRPLTYPQYSP-------P----QPRPGVIRALGPPPGVRRRPC
50 60 70 80 90
120 130 140 150 160 170
pF1KB7 EQLSPEEEEKRRIRRERNKLAAAKCRNRRRELTEKLQAETEELEEEKSGLQKEIAELQKE
::.::::::.::.::::::::::::::::.:::. :::::..::.::::::.:: ::::.
CCDS81 EQISPEEEERRRVRRERNKLAAAKCRNRRKELTDFLQAETDKLEDEKSGLQREIEELQKQ
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB7 KEKLEFMLVAHGPVCKISPEERRSPPAPGLQPMRSGGGSVGAVVVKQEPLEEDSPSSSSA
::.::..: :: :.::: :: :.. : :. :.:..
CCDS81 KERLELVLEAHRPICKI-PE----------------GAKEG-----------DTGSTSGT
160 170 180
240 250 260 270 280 290
pF1KB7 GLDKAQRSVIKPISIAGGFYGE-EPLHTPIVVTSTPAVTPGTSNLVFTYPSVLEQESPAS
. : . ::.. : : : :::: ..: ::..:: : .::::::: .
CCDS81 SSPPAPCRPVPCISLSPGPVLEPEALHTPTLMT-TPSLTPFTPSLVFTYPS--------T
190 200 210 220 230 240
300 310 320
pF1KB7 PSESCSKAHRRSSSS-GDQSSDSLNSPTLLAL
: : :..:::.:::: :: ::: :.:::::::
CCDS81 P-EPCASAHRKSSSSSGDPSSDPLGSPTLLAL
250 260 270
>>CCDS12664.1 FOSB gene_id:2354|Hs108|chr19 (338 aa)
initn: 638 init1: 433 opt: 487 Z-score: 373.4 bits: 77.4 E(32554): 1.8e-14
Smith-Waterman score: 722; 44.0% identity (63.4% similar) in 366 aa overlap (1-326:1-338)
10 20 30 40 50
pF1KB7 MYQDYPGNFDTSSRGSSGSPAHAESYSS---------GGGGQQKFRV-DMPGSGSAFIPT
:.: .::..:..:: ::. :... :: ....:. . .:::: :.::
CCDS12 MFQAFPGDYDSGSRCSSSPSAESQYLSSVDSFGSPPTAAASQECAGLGEMPGS---FVPT
10 20 30 40 50
60 70 80 90 100
pF1KB7 INAITTSQDLQWMVQPTVITSM---------SNPYPRSHPYSPLPGLA-SVPGHMALPRP
..::::::::::.::::.:.:: :.: : ::. .:: . :.:: .
CCDS12 VTAITTSQDLQWLVQPTLISSMAQSQGQPLASQP-PVVDPYD-MPGTSYSTPGMSGYSSG
60 70 80 90 100 110
110 120 130 140
pF1KB7 GVI-----KTIGTTVG-----------RRRRDEQLSPEEEEKRRIRRERNKLAAAKCRNR
:. .: ::: : :: :.: :.::::::::.:::::::::::::::
CCDS12 GASGSGGPSTSGTTSGPGPARPARARPRRPREETLTPEEEEKRRVRRERNKLAAAKCRNR
120 130 140 150 160 170
150 160 170 180 190 200
pF1KB7 RRELTEKLQAETEELEEEKSGLQKEIAELQKEKEKLEFMLVAHGPVCKISPEERRSPPAP
:::::..:::::..:::::. :..::::::::::.:::.:::: : ::: :: :.:
CCDS12 RRELTDRLQAETDQLEEEKAELESEIAELQKEKERLEFVLVAHKPGCKIPYEE---GPGP
180 190 200 210 220 230
210 220 230 240 250 260
pF1KB7 G-LQPMRSGGGSVGAVVVKQEPLEEDSPSSSSAGLDKAQRSVIKPISIAGGFYGEEPLHT
: : .:. ::. : :.. . : : : : : ....... :.
CCDS12 GPLAEVRDLPGSAPA---KEDGFSWLLPPPPPPPLP-FQTSQDAPPNLTASLF----THS
240 250 260 270 280
270 280 290 300 310 320
pF1KB7 PIVVTSTP--AVTPG-TSNLVFTYPSVLEQESPASPSESCSKAHRRSSSSGDQSSDSLNS
. : . : .:.:. ::..:.: : : . . :.: :.: :: :: :::
CCDS12 EVQVLGDPFPVVNPSYTSSFVLTCPEV----------SAFAGAQRTSGS--DQPSDPLNS
290 300 310 320 330
pF1KB7 PTLLAL
:.::::
CCDS12 PSLLAL
326 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 10:23:00 2016 done: Sat Nov 5 10:23:01 2016
Total Scan time: 3.090 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]