FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7973, 214 aa
  1>>>pF1KB7973 214 - 214 aa - 214 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1952+/-0.000884; mu= 10.8959+/- 0.053
 mean_var=109.2446+/-21.420, 0's: 0 Z-trim(109.4): 45  B-trim: 15 in 1/50
 Lambda= 0.122708
 statistics sampled from 10810 (10847) to 10810 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.709), E-opt: 0.2 (0.333), width:  16
 Scan time:  2.020

The best scores are:                                      opt bits E(32554)
CCDS42341.1 MLX gene_id:6945|Hs108|chr17           ( 214) 1422 261.8 2.3e-70
CCDS45687.1 MLX gene_id:6945|Hs108|chr17           ( 244) 1237 229.1 1.8e-60
CCDS11430.1 MLX gene_id:6945|Hs108|chr17           ( 298) 1237 229.2 2.1e-60


>>CCDS42341.1 MLX gene_id:6945|Hs108|chr17                (214 aa)
 initn: 1422 init1: 1422 opt: 1422  Z-score: 1376.8  bits: 261.8 E(32554): 2.3e-70
Smith-Waterman score: 1422; 100.0% identity (100.0% similar) in 214 aa overlap (1-214:1-214)

               10        20        30        40        50        60
pF1KB7 MTEPGASPEDPWVKVEYAYSDNSLDPDDEDSDYHQEAYKESYKDRRRRAHTQAEQKRRDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MTEPGASPEDPWVKVEYAYSDNSLDPDDEDSDYHQEAYKESYKDRRRRAHTQAEQKRRDA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 IKRGYDDLQTIVPTCQQQDFSIGSQKLSKAIVLQKTIDYIQFLHKEKKKQEEEVSTLRKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 IKRGYDDLQTIVPTCQQQDFSIGSQKLSKAIVLQKTIDYIQFLHKEKKKQEEEVSTLRKD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 VTALKIMKVNYEQIVKAHQDNPHEGEDQVSDQVKFNVFQGIMDSLFQSFNASISVASFQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VTALKIMKVNYEQIVKAHQDNPHEGEDQVSDQVKFNVFQGIMDSLFQSFNASISVASFQE
              130       140       150       160       170       180

              190       200       210    
pF1KB7 LSACVFSWIEEHCKPQTLREIVIGVLHQLKNQLY
       ::::::::::::::::::::::::::::::::::
CCDS42 LSACVFSWIEEHCKPQTLREIVIGVLHQLKNQLY
              190       200       210    

>>CCDS45687.1 MLX gene_id:6945|Hs108|chr17                (244 aa)
 initn: 1237 init1: 1237 opt: 1237  Z-score: 1199.1  bits: 229.1 E(32554): 1.8e-60
Smith-Waterman score: 1352; 87.7% identity (87.7% similar) in 244 aa overlap (1-214:1-244)

               10        20                                      30
pF1KB7 MTEPGASPEDPWVKVEYAYSDNSLDP------------------------------DDED
       ::::::::::::::::::::::::::                              ::::
CCDS45 MTEPGASPEDPWVKVEYAYSDNSLDPGLFVESTRKGSVVSRANSIGSTSASSVPNTDDED
               10        20        30        40        50        60

               40        50        60        70        80        90
pF1KB7 SDYHQEAYKESYKDRRRRAHTQAEQKRRDAIKRGYDDLQTIVPTCQQQDFSIGSQKLSKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SDYHQEAYKESYKDRRRRAHTQAEQKRRDAIKRGYDDLQTIVPTCQQQDFSIGSQKLSKA
               70        80        90       100       110       120

              100       110       120       130       140       150
pF1KB7 IVLQKTIDYIQFLHKEKKKQEEEVSTLRKDVTALKIMKVNYEQIVKAHQDNPHEGEDQVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 IVLQKTIDYIQFLHKEKKKQEEEVSTLRKDVTALKIMKVNYEQIVKAHQDNPHEGEDQVS
              130       140       150       160       170       180

              160       170       180       190       200       210
pF1KB7 DQVKFNVFQGIMDSLFQSFNASISVASFQELSACVFSWIEEHCKPQTLREIVIGVLHQLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DQVKFNVFQGIMDSLFQSFNASISVASFQELSACVFSWIEEHCKPQTLREIVIGVLHQLK
              190       200       210       220       230       240

           
pF1KB7 NQLY
       ::::
CCDS45 NQLY
           

>>CCDS11430.1 MLX gene_id:6945|Hs108|chr17                (298 aa)
 initn: 1329 init1: 1237 opt: 1237  Z-score: 1197.9  bits: 229.2 E(32554): 2.1e-60
Smith-Waterman score: 1252; 87.0% identity (87.0% similar) in 231 aa overlap (14-214:68-298)

                                10        20                       
pF1KB7                  MTEPGASPEDPWVKVEYAYSDNSLDP-----------------
                                     :::::::::::::                 
CCDS11 RRGASLLSPKSPTLSVPRGCREDSSHPACAKVEYAYSDNSLDPGLFVESTRKGSVVSRAN
        40        50        60        70        80        90       

                      30        40        50        60        70   
pF1KB7 -------------DDEDSDYHQEAYKESYKDRRRRAHTQAEQKRRDAIKRGYDDLQTIVP
                    :::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SIGSTSASSVPNTDDEDSDYHQEAYKESYKDRRRRAHTQAEQKRRDAIKRGYDDLQTIVP
       100       110       120       130       140       150       

            80        90       100       110       120       130   
pF1KB7 TCQQQDFSIGSQKLSKAIVLQKTIDYIQFLHKEKKKQEEEVSTLRKDVTALKIMKVNYEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TCQQQDFSIGSQKLSKAIVLQKTIDYIQFLHKEKKKQEEEVSTLRKDVTALKIMKVNYEQ
       160       170       180       190       200       210       

           140       150       160       170       180       190   
pF1KB7 IVKAHQDNPHEGEDQVSDQVKFNVFQGIMDSLFQSFNASISVASFQELSACVFSWIEEHC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IVKAHQDNPHEGEDQVSDQVKFNVFQGIMDSLFQSFNASISVASFQELSACVFSWIEEHC
       220       230       240       250       260       270       

           200       210    
pF1KB7 KPQTLREIVIGVLHQLKNQLY
       :::::::::::::::::::::
CCDS11 KPQTLREIVIGVLHQLKNQLY
       280       290        




214 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:47:58 2016 done: Sat Nov  5 14:47:58 2016
 Total Scan time:  2.020 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]