Result of FASTA (ccds) for
pF1KB7969
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7969, 285 aa
1>>>pF1KB7969 285 - 285 aa - 285 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1263+/-0.000884; mu= 15.3980+/- 0.053
mean_var=55.0442+/-10.987, 0's: 0 Z-trim(104.6): 20 B-trim: 2 in 1/51
Lambda= 0.172869
statistics sampled from 7973 (7982) to 7973 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.624), E-opt: 0.2 (0.245), width: 16
Scan time: 2.330
The best scores are: opt bits E(32554)
CCDS6000.2 CNOT7 gene_id:29883|Hs108|chr8 ( 285) 1920 486.9 6.9e-138
CCDS55202.1 CNOT7 gene_id:29883|Hs108|chr8 ( 244) 1630 414.6 3.5e-116
CCDS4329.1 CNOT8 gene_id:9337|Hs108|chr5 ( 292) 1500 382.2 2.4e-106
CCDS78074.1 CNOT8 gene_id:9337|Hs108|chr5 ( 186) 904 233.5 8.9e-62
CCDS75361.1 CNOT8 gene_id:9337|Hs108|chr5 ( 238) 624 163.7 1.2e-40
CCDS78075.1 CNOT8 gene_id:9337|Hs108|chr5 ( 128) 574 151.1 3.8e-37
>>CCDS6000.2 CNOT7 gene_id:29883|Hs108|chr8 (285 aa)
initn: 1920 init1: 1920 opt: 1920 Z-score: 2589.0 bits: 486.9 E(32554): 6.9e-138
Smith-Waterman score: 1920; 100.0% identity (100.0% similar) in 285 aa overlap (1-285:1-285)
10 20 30 40 50 60
pF1KB7 MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 QYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 QYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 IQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 IQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 FFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 FFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFK
190 200 210 220 230 240
250 260 270 280
pF1KB7 MREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEANKQS
:::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEANKQS
250 260 270 280
>>CCDS55202.1 CNOT7 gene_id:29883|Hs108|chr8 (244 aa)
initn: 1686 init1: 1630 opt: 1630 Z-score: 2199.2 bits: 414.6 E(32554): 3.5e-116
Smith-Waterman score: 1630; 99.6% identity (100.0% similar) in 244 aa overlap (1-244:1-244)
10 20 30 40 50 60
pF1KB7 MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 QYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 IQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 IQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 FFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 FFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFK
190 200 210 220 230 240
250 260 270 280
pF1KB7 MREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEANKQS
:::.
CCDS55 MREV
>>CCDS4329.1 CNOT8 gene_id:9337|Hs108|chr5 (292 aa)
initn: 1498 init1: 1498 opt: 1500 Z-score: 2022.8 bits: 382.2 E(32554): 2.4e-106
Smith-Waterman score: 1500; 76.8% identity (92.1% similar) in 280 aa overlap (1-280:1-280)
10 20 30 40 50 60
pF1KB7 MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADY
:::: :..:: :::::: ::.:::.:::... .:.:.::::::::::.::::::::. ::
CCDS43 MPAALVENSQVICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 QYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSG
::::::::::::::::::::: ::.:::: : .:::::::::::::::.::::.::..::
CCDS43 QYQLLRCNVDLLKIIQLGLTFTNEKGEYPSGINTWQFNFKFNLTEDMYSQDSIDLLANSG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 IQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELD
.::.:::::::.: .:::::::::::::..::::::::::::::..:.::.: ::::: .
CCDS43 LQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 FFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFK
::.:: :::: ::::::::::::::::::::::.::.:.::: ::::::::::::::::.
CCDS43 FFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFR
190 200 210 220 230 240
250 260 270 280
pF1KB7 MREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEANKQS
:.:.:::: ::::::::.:::::.: . :: .. .:.
CCDS43 MKELFFEDSIDDAKYCGRLYGLGTGVAQKQNEDVDSAQEKMSILAIINNMQQ
250 260 270 280 290
>>CCDS78074.1 CNOT8 gene_id:9337|Hs108|chr5 (186 aa)
initn: 902 init1: 902 opt: 904 Z-score: 1222.6 bits: 233.5 E(32554): 8.9e-62
Smith-Waterman score: 904; 75.3% identity (92.0% similar) in 174 aa overlap (107-280:1-174)
80 90 100 110 120 130
pF1KB7 LGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYF
::.::::.::..::.::.:::::::.: .:
CCDS78 MYSQDSIDLLANSGLQFQKHEEEGIDTLHF
10 20 30
140 150 160 170 180 190
pF1KB7 AELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVK
::::::::::::..::::::::::::::..:.::.: ::::: .::.:: :::: :::::
CCDS78 AELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFFPSIYDVK
40 50 60 70 80 90
200 210 220 230 240 250
pF1KB7 YLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYC
:::::::::::::::::.::.:.::: ::::::::::::::::.:.:.:::: :::::::
CCDS78 YLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYC
100 110 120 130 140 150
260 270 280
pF1KB7 GHLYGLGSGSSYVQNGTGNAYEEEANKQS
:.:::::.: . :: .. .:.
CCDS78 GRLYGLGTGVAQKQNEDVDSAQEKMSILAIINNMQQ
160 170 180
>>CCDS75361.1 CNOT8 gene_id:9337|Hs108|chr5 (238 aa)
initn: 648 init1: 622 opt: 624 Z-score: 843.5 bits: 163.7 E(32554): 1.2e-40
Smith-Waterman score: 1086; 61.4% identity (73.2% similar) in 280 aa overlap (1-280:1-226)
10 20 30 40 50 60
pF1KB7 MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADY
:::: :..:: :::::: ::.:::.:::... .:.:.::::::::::.::::::::. ::
CCDS75 MPAALVENSQVICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 QYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSG
::::::::::::::::::::: ::.:::: : .:::::::::::
CCDS75 QYQLLRCNVDLLKIIQLGLTFTNEKGEYPSGINTWQFNFKFNLT----------------
70 80 90 100
130 140 150 160 170 180
pF1KB7 IQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELD
::::::..:.::.: ::::: .
CCDS75 --------------------------------------GYDFGYMVKLLTDSRLPEEEHE
110 120
190 200 210 220 230 240
pF1KB7 FFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFK
::.:: :::: ::::::::::::::::::::::.::.:.::: ::::::::::::::::.
CCDS75 FFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFR
130 140 150 160 170 180
250 260 270 280
pF1KB7 MREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEANKQS
:.:.:::: ::::::::.:::::.: . :: .. .:.
CCDS75 MKELFFEDSIDDAKYCGRLYGLGTGVAQKQNEDVDSAQEKMSILAIINNMQQ
190 200 210 220 230
>>CCDS78075.1 CNOT8 gene_id:9337|Hs108|chr5 (128 aa)
initn: 586 init1: 572 opt: 574 Z-score: 780.4 bits: 151.1 E(32554): 3.8e-37
Smith-Waterman score: 574; 72.4% identity (88.8% similar) in 116 aa overlap (165-280:1-116)
140 150 160 170 180 190
pF1KB7 YFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYD
..:.::.: ::::: .::.:: :::: :::
CCDS78 MVKLLTDSRLPEEEHEFFHILNLFFPSIYD
10 20 30
200 210 220 230 240 250
pF1KB7 VKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAK
:::::::::::::::::::.::.:.::: ::::::::::::::::.:.:.:::: :::::
CCDS78 VKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAK
40 50 60 70 80 90
260 270 280
pF1KB7 YCGHLYGLGSGSSYVQNGTGNAYEEEANKQS
:::.:::::.: . :: .. .:.
CCDS78 YCGRLYGLGTGVAQKQNEDVDSAQEKMSILAIINNMQQ
100 110 120
285 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 10:19:59 2016 done: Sat Nov 5 10:20:00 2016
Total Scan time: 2.330 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]