Result of FASTA (ccds) for
pF1KB7948
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7948, 375 aa
1>>>pF1KB7948 375 - 375 aa - 375 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.0026+/-0.000939; mu= 11.3335+/- 0.057
mean_var=187.1416+/-39.646, 0's: 0 Z-trim(112.0): 163 B-trim: 0 in 0/52
Lambda= 0.093754
statistics sampled from 12623 (12815) to 12623 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.394), width: 16
Scan time: 2.890
The best scores are: opt bits E(32554)
CCDS7613.1 TIAL1 gene_id:7073|Hs108|chr10 ( 375) 2624 367.1 1.5e-101
CCDS31295.1 TIAL1 gene_id:7073|Hs108|chr10 ( 392) 2341 328.8 5e-90
CCDS1900.1 TIA1 gene_id:7072|Hs108|chr2 ( 375) 2041 288.2 8e-78
CCDS1901.1 TIA1 gene_id:7072|Hs108|chr2 ( 386) 1516 217.2 1.9e-56
CCDS9311.1 PABPC3 gene_id:5042|Hs108|chr13 ( 631) 441 72.0 1.6e-12
>>CCDS7613.1 TIAL1 gene_id:7073|Hs108|chr10 (375 aa)
initn: 2624 init1: 2624 opt: 2624 Z-score: 1936.8 bits: 367.1 E(32554): 1.5e-101
Smith-Waterman score: 2624; 100.0% identity (100.0% similar) in 375 aa overlap (1-375:1-375)
10 20 30 40 50 60
pF1KB7 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 AAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 AAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 GKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 GKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 KSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 KSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWSQVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWSQVY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 GNPQQYGQYMANGWQVPPYGVYGQPWNQQGFGVDQSPSAAWMGGFGAQPPQGQAPPPVIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 GNPQQYGQYMANGWQVPPYGVYGQPWNQQGFGVDQSPSAAWMGGFGAQPPQGQAPPPVIP
310 320 330 340 350 360
370
pF1KB7 PPNQAGYGMASYQTQ
:::::::::::::::
CCDS76 PPNQAGYGMASYQTQ
370
>>CCDS31295.1 TIAL1 gene_id:7073|Hs108|chr10 (392 aa)
initn: 2341 init1: 2341 opt: 2341 Z-score: 1729.7 bits: 328.8 E(32554): 5e-90
Smith-Waterman score: 2580; 95.7% identity (95.7% similar) in 392 aa overlap (1-375:1-392)
10 20 30 40
pF1KB7 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITE-----------------
:::::::::::::::::::::::::::::::::::::::::::
CCDS31 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQ
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 HTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 HTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGD
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB7 LSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWL
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB7 GGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQ
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB7 TFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTK
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB7 NFQQVDYSQWGQWSQVYGNPQQYGQYMANGWQVPPYGVYGQPWNQQGFGVDQSPSAAWMG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 NFQQVDYSQWGQWSQVYGNPQQYGQYMANGWQVPPYGVYGQPWNQQGFGVDQSPSAAWMG
310 320 330 340 350 360
350 360 370
pF1KB7 GFGAQPPQGQAPPPVIPPPNQAGYGMASYQTQ
::::::::::::::::::::::::::::::::
CCDS31 GFGAQPPQGQAPPPVIPPPNQAGYGMASYQTQ
370 380 390
>>CCDS1900.1 TIA1 gene_id:7072|Hs108|chr2 (375 aa)
initn: 1977 init1: 1690 opt: 2041 Z-score: 1510.6 bits: 288.2 E(32554): 8e-78
Smith-Waterman score: 2041; 79.5% identity (90.0% similar) in 380 aa overlap (2-375:1-375)
10 20 30 40 50 60
pF1KB7 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRD
:::. .:.:::::::::::::.:::::::::::::.:::: . ..:::::::::.:::
CCDS19 MEDE-MPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRH
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 AAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPF
:::::::::::::.::::::::::::::::::::::::::::::::::::::::.:::::
CCDS19 AAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPF
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB7 GKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAP
:.:::::::::::::::::::::::.:: :::::: .:::::::::::::::::::::::
CCDS19 GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAP
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB7 KSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK
::: :.::::: ...:::::::.::::::::..::::.::::::::::::::::::::.:
CCDS19 KSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK
180 190 200 210 220 230
250 260 270 280 290
pF1KB7 GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQ---VDYSQ-WGQW
:::::::..::::::::::::::::::::::::::::. :: . :: . : : .:::
CCDS19 GYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQPYGQW
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB7 SQVYGNPQQYGQYMANGWQVPPYGVYGQPWNQQGFGVDQSPSAAWMG-GFGAQPPQGQAP
.: ::: :: :::: :::::: ::.::: ::::::. :: :: ::: ..:.::::::
CCDS19 GQWYGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQS-SAPWMGPNYGVQPPQGQNG
300 310 320 330 340 350
360 370
pF1KB7 PPVIPPPNQ-AGYGMASYQTQ
. ::: .:: .:.:.::
CCDS19 SML---PNQPSGYRVAGYETQ
360 370
>>CCDS1901.1 TIA1 gene_id:7072|Hs108|chr2 (386 aa)
initn: 1450 init1: 1163 opt: 1516 Z-score: 1126.7 bits: 217.2 E(32554): 1.9e-56
Smith-Waterman score: 2004; 77.0% identity (87.5% similar) in 391 aa overlap (2-375:1-386)
10 20 30 40 50 60
pF1KB7 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRD
:::. .:.:::::::::::::.:::::::::::::.:::: . ..:::::::::.:::
CCDS19 MEDE-MPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRH
10 20 30 40 50
70 80 90 100
pF1KB7 AAAALAAMNGRKILGKEVKVNWATTPSSQKKDTS-----------NHFHVFVGDLSPEIT
:::::::::::::.:::::::::::::::::::: .::::::::::::::
CCDS19 AAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEIT
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB7 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR
:::::.::::::.:::::::::::::::::::::::.:: :::::: .::::::::::::
CCDS19 TEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB7 TNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFG
:::::::::::::: :.::::: ...:::::::.::::::::..::::.:::::::::::
CCDS19 TNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFG
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB7 QIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQ--
:::::::::.::::::::..::::::::::::::::::::::::::::. :: . ::
CCDS19 QIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQN
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB7 -VDYSQ-WGQWSQVYGNPQQYGQYMANGWQVPPYGVYGQPWNQQGFGVDQSPSAAWMG-G
. : : .:::.: ::: :: :::: :::::: ::.::: ::::::. :: :: ::: .
CCDS19 QIGYPQPYGQWGQWYGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQS-SAPWMGPN
300 310 320 330 340 350
350 360 370
pF1KB7 FGAQPPQGQAPPPVIPPPNQ-AGYGMASYQTQ
.:.:::::: . ::: .:: .:.:.::
CCDS19 YGVQPPQGQNGSML---PNQPSGYRVAGYETQ
360 370 380
>>CCDS9311.1 PABPC3 gene_id:5042|Hs108|chr13 (631 aa)
initn: 357 init1: 148 opt: 441 Z-score: 338.4 bits: 72.0 E(32554): 1.6e-12
Smith-Waterman score: 441; 27.0% identity (60.1% similar) in 363 aa overlap (11-361:101-450)
10 20 30 40
pF1KB7 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKM
..: ::...... . . : .: ::..
CCDS93 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNV
80 90 100 110 120 130
50 60 70 80 90
pF1KB7 ITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT---SNHF
. ..... : ::.: :. : :. ::: . :..: :. . . .. . ...:
CCDS93 VCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEF
140 150 160 170 180 190
100 110 120 130 140 150
pF1KB7 -HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIV
.:.. ... .. : .:. :. :: ...:. : .:::::.::::: . ::..:.
CCDS93 PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD
200 210 220 230 240
160 170 180 190 200 210
pF1KB7 HMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGL
.:.:. :.:.:: .. : .: . ..:. . : . .: ... . : .: .. .:.
CCDS93 EMNGKELNGKQIYVGRAQKK--VERQTELKRTFEQMKQDRITRYQVVN--LYVKNLDDGI
250 260 270 280 290 300
220 230 240 250 260 270
pF1KB7 TDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKC
:. .:..::::: : .:. : ::..:: ::. : :..:.. .:: . . .
CCDS93 DDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV
310 320 330 340 350 360
280 290 300 310 320
pF1KB7 YWGKESPDMTKNFQQVDYSQWGQWSQVYGNPQQY----GQYMANGWQVPPYGVYGQPWNQ
.... . . . .: : . ..: . :.: : .:. :. ...: : .:
CCDS93 ALAQRKEE-RQAYLTNEYMQ--RMASVRAVPNQRAPPSGYFMTAVPQTQNHAAYYPP-SQ
370 380 390 400 410 420
330 340 350 360 370
pF1KB7 QGFGVDQSPSAAWMGGFGAQPPQGQAPPPVIPPPNQAGYGMASYQTQ
. :: : . ::.: : : .: :
CCDS93 IA---RLRPSPRWTAQ-GARPHPFQNKPSAIRPGAPRVPFSTMRPASSQVPRVMSTQRVA
430 440 450 460 470
CCDS93 NTSTQTVGPRPAAAAAAAATPAVRTVPRYKYAAGVRNPQQHRNAQPQVTMQQLAVHVQGQ
480 490 500 510 520 530
375 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 10:14:35 2016 done: Sat Nov 5 10:14:35 2016
Total Scan time: 2.890 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]