Result of FASTA (omim) for
pF1KB7934
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7934, 215 aa
1>>>pF1KB7934 215 - 215 aa - 215 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.8158+/-0.000386; mu= -0.3684+/- 0.024
mean_var=308.6717+/-62.263, 0's: 0 Z-trim(122.6): 74 B-trim: 286 in 1/57
Lambda= 0.073001
statistics sampled from 40865 (40966) to 40865 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.789), E-opt: 0.2 (0.48), width: 16
Scan time: 6.720
The best scores are: opt bits E(85289)
NP_001300822 (OMIM: 163905) high mobility group pr ( 215) 1459 166.1 3.9e-41
NP_002119 (OMIM: 163905) high mobility group prote ( 215) 1459 166.1 3.9e-41
NP_001300821 (OMIM: 163905) high mobility group pr ( 215) 1459 166.1 3.9e-41
NP_002120 (OMIM: 163906) high mobility group prote ( 209) 1182 136.9 2.3e-32
NP_001124160 (OMIM: 163906) high mobility group pr ( 209) 1182 136.9 2.3e-32
NP_001124161 (OMIM: 163906) high mobility group pr ( 209) 1182 136.9 2.3e-32
NP_003104 (OMIM: 604585) nuclear autoantigen Sp-10 ( 879) 1048 123.5 1e-27
NP_005333 (OMIM: 300193,300915) high mobility grou ( 200) 1021 119.9 2.9e-27
NP_001288157 (OMIM: 300193,300915) high mobility g ( 200) 1021 119.9 2.9e-27
NP_001288158 (OMIM: 300193,300915) high mobility g ( 200) 1021 119.9 2.9e-27
NP_001288160 (OMIM: 300193,300915) high mobility g ( 220) 1021 120.0 3.1e-27
NP_003137 (OMIM: 604328) FACT complex subunit SSRP ( 709) 294 44.0 0.00073
XP_016873669 (OMIM: 604328) PREDICTED: FACT comple ( 843) 294 44.1 0.00082
NP_001092266 (OMIM: 611163) TOX high mobility grou ( 464) 258 40.0 0.0077
NP_116272 (OMIM: 611163) TOX high mobility group b ( 464) 258 40.0 0.0077
NP_001092267 (OMIM: 611163) TOX high mobility grou ( 506) 258 40.1 0.0081
XP_006723947 (OMIM: 611163) PREDICTED: TOX high mo ( 515) 258 40.1 0.0082
XP_011521304 (OMIM: 611416) PREDICTED: TOX high mo ( 553) 256 39.9 0.01
>>NP_001300822 (OMIM: 163905) high mobility group protei (215 aa)
initn: 1459 init1: 1459 opt: 1459 Z-score: 859.4 bits: 166.1 E(85289): 3.9e-41
Smith-Waterman score: 1459; 100.0% identity (100.0% similar) in 215 aa overlap (1-215:1-215)
10 20 30 40 50 60
pF1KB7 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK
130 140 150 160 170 180
190 200 210
pF1KB7 SKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE
:::::::::::::::::::::::::::::::::::
NP_001 SKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE
190 200 210
>>NP_002119 (OMIM: 163905) high mobility group protein B (215 aa)
initn: 1459 init1: 1459 opt: 1459 Z-score: 859.4 bits: 166.1 E(85289): 3.9e-41
Smith-Waterman score: 1459; 100.0% identity (100.0% similar) in 215 aa overlap (1-215:1-215)
10 20 30 40 50 60
pF1KB7 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK
130 140 150 160 170 180
190 200 210
pF1KB7 SKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE
:::::::::::::::::::::::::::::::::::
NP_002 SKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE
190 200 210
>>NP_001300821 (OMIM: 163905) high mobility group protei (215 aa)
initn: 1459 init1: 1459 opt: 1459 Z-score: 859.4 bits: 166.1 E(85289): 3.9e-41
Smith-Waterman score: 1459; 100.0% identity (100.0% similar) in 215 aa overlap (1-215:1-215)
10 20 30 40 50 60
pF1KB7 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK
130 140 150 160 170 180
190 200 210
pF1KB7 SKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE
:::::::::::::::::::::::::::::::::::
NP_001 SKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE
190 200 210
>>NP_002120 (OMIM: 163906) high mobility group protein B (209 aa)
initn: 1182 init1: 1182 opt: 1182 Z-score: 701.9 bits: 136.9 E(85289): 2.3e-32
Smith-Waterman score: 1182; 81.3% identity (94.3% similar) in 209 aa overlap (1-209:1-209)
10 20 30 40 50 60
pF1KB7 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
::::::.::::::::::::::::::::::::::.::::.::::::::::::::::::.::
NP_002 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
:::::.:::::.::::.:.::::. : : :::::::::::::::::::.:::::.:::::
NP_002 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK
::::.::::::::.. .: ::::::.::::::::::::::::::::: .:.::: .
NP_002 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG
130 140 150 160 170 180
190 200 210
pF1KB7 SKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE
::::.: :..::.::.:.:.:.:::::::
NP_002 SKKKNEPEDEEEEEEEEDEDEEEEDEDEE
190 200
>>NP_001124160 (OMIM: 163906) high mobility group protei (209 aa)
initn: 1182 init1: 1182 opt: 1182 Z-score: 701.9 bits: 136.9 E(85289): 2.3e-32
Smith-Waterman score: 1182; 81.3% identity (94.3% similar) in 209 aa overlap (1-209:1-209)
10 20 30 40 50 60
pF1KB7 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
::::::.::::::::::::::::::::::::::.::::.::::::::::::::::::.::
NP_001 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
:::::.:::::.::::.:.::::. : : :::::::::::::::::::.:::::.:::::
NP_001 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK
::::.::::::::.. .: ::::::.::::::::::::::::::::: .:.::: .
NP_001 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG
130 140 150 160 170 180
190 200 210
pF1KB7 SKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE
::::.: :..::.::.:.:.:.:::::::
NP_001 SKKKNEPEDEEEEEEEEDEDEEEEDEDEE
190 200
>>NP_001124161 (OMIM: 163906) high mobility group protei (209 aa)
initn: 1182 init1: 1182 opt: 1182 Z-score: 701.9 bits: 136.9 E(85289): 2.3e-32
Smith-Waterman score: 1182; 81.3% identity (94.3% similar) in 209 aa overlap (1-209:1-209)
10 20 30 40 50 60
pF1KB7 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
::::::.::::::::::::::::::::::::::.::::.::::::::::::::::::.::
NP_001 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
:::::.:::::.::::.:.::::. : : :::::::::::::::::::.:::::.:::::
NP_001 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK
::::.::::::::.. .: ::::::.::::::::::::::::::::: .:.::: .
NP_001 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG
130 140 150 160 170 180
190 200 210
pF1KB7 SKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE
::::.: :..::.::.:.:.:.:::::::
NP_001 SKKKNEPEDEEEEEEEEDEDEEEEDEDEE
190 200
>>NP_003104 (OMIM: 604585) nuclear autoantigen Sp-100 is (879 aa)
initn: 1273 init1: 1037 opt: 1048 Z-score: 618.4 bits: 123.5 E(85289): 1e-27
Smith-Waterman score: 1048; 81.3% identity (89.9% similar) in 198 aa overlap (7-204:682-878)
10 20 30
pF1KB7 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASV
.: : : .:. : ::::::.:::::
NP_003 SKNWKLSIRCGGYTLKVLMENKFLPEPPSTRKKRILESHNNTLVDPC-EEHKKKNPDASV
660 670 680 690 700 710
40 50 60 70 80 90
pF1KB7 NFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPK
.:::: ::::: :::. ::::::::::::::::.:::::::::::::: :::::::::::
NP_003 KFSEFLKKCSETWKTIFAKEKGKFEDMAKADKAHYEREMKTYIPPKGEKKKKFKDPNAPK
720 730 740 750 760 770
100 110 120 130 140 150
pF1KB7 RPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYE
::: :::::::::::::::::::::: ::.:::. ::::::: ::: ::::::::::::.
NP_003 RPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAGMWNNTAAADKQFYEKKAAKLKEKYK
780 790 800 810 820 830
160 170 180 190 200 210
pF1KB7 KDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE
::::::::::::..::: ::::::::::::::::::::..::.:::..
NP_003 KDIAAYRAKGKPNSAKKRVVKAEKSKKKKEEEEDEEDEQEEENEEDDDK
840 850 860 870
>>NP_005333 (OMIM: 300193,300915) high mobility group pr (200 aa)
initn: 1247 init1: 536 opt: 1021 Z-score: 610.5 bits: 119.9 E(85289): 2.9e-27
Smith-Waterman score: 1021; 74.3% identity (88.8% similar) in 206 aa overlap (1-206:1-200)
10 20 30 40 50 60
pF1KB7 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
:.:::::::.::::.:::::::::::::::.:.. :::.::::::::::::::.:::.::
NP_005 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
..::::::.::.:::: : : :: ::: ::::::::::.:::::::.:::::. .::.
NP_005 DEMAKADKVRYDREMKDYGPAKGGKKKK--DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI
70 80 90 100 110
130 140 150 160 170 180
pF1KB7 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK
::::::::::::::: ..:::: ::::::::::::.: :..::: :.:: : .:. .
NP_005 SIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYKSKGKFDGAK-GPAKVAR
120 130 140 150 160 170
190 200 210
pF1KB7 SKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE
:: ::::::.::.:::::.::::
NP_005 ---KKVEEEDEEEEEEEEEEEEEEDE
180 190 200
>>NP_001288157 (OMIM: 300193,300915) high mobility group (200 aa)
initn: 1247 init1: 536 opt: 1021 Z-score: 610.5 bits: 119.9 E(85289): 2.9e-27
Smith-Waterman score: 1021; 74.3% identity (88.8% similar) in 206 aa overlap (1-206:1-200)
10 20 30 40 50 60
pF1KB7 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
:.:::::::.::::.:::::::::::::::.:.. :::.::::::::::::::.:::.::
NP_001 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
..::::::.::.:::: : : :: ::: ::::::::::.:::::::.:::::. .::.
NP_001 DEMAKADKVRYDREMKDYGPAKGGKKKK--DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI
70 80 90 100 110
130 140 150 160 170 180
pF1KB7 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK
::::::::::::::: ..:::: ::::::::::::.: :..::: :.:: : .:. .
NP_001 SIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYKSKGKFDGAK-GPAKVAR
120 130 140 150 160 170
190 200 210
pF1KB7 SKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE
:: ::::::.::.:::::.::::
NP_001 ---KKVEEEDEEEEEEEEEEEEEEDE
180 190 200
>>NP_001288158 (OMIM: 300193,300915) high mobility group (200 aa)
initn: 1247 init1: 536 opt: 1021 Z-score: 610.5 bits: 119.9 E(85289): 2.9e-27
Smith-Waterman score: 1021; 74.3% identity (88.8% similar) in 206 aa overlap (1-206:1-200)
10 20 30 40 50 60
pF1KB7 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
:.:::::::.::::.:::::::::::::::.:.. :::.::::::::::::::.:::.::
NP_001 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
..::::::.::.:::: : : :: ::: ::::::::::.:::::::.:::::. .::.
NP_001 DEMAKADKVRYDREMKDYGPAKGGKKKK--DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI
70 80 90 100 110
130 140 150 160 170 180
pF1KB7 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK
::::::::::::::: ..:::: ::::::::::::.: :..::: :.:: : .:. .
NP_001 SIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYKSKGKFDGAK-GPAKVAR
120 130 140 150 160 170
190 200 210
pF1KB7 SKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE
:: ::::::.::.:::::.::::
NP_001 ---KKVEEEDEEEEEEEEEEEEEEDE
180 190 200
215 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 10:12:24 2016 done: Sat Nov 5 10:12:25 2016
Total Scan time: 6.720 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]