FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7932, 213 aa
  1>>>pF1KB7932 213 - 213 aa - 213 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1421+/-0.000273; mu= 11.7198+/- 0.017
 mean_var=106.9274+/-21.245, 0's: 0 Z-trim(121.6): 23  B-trim: 0 in 0/54
 Lambda= 0.124031
 statistics sampled from 38508 (38531) to 38508 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.797), E-opt: 0.2 (0.452), width:  16
 Scan time:  6.210

The best scores are:                                      opt bits E(85289)
NP_000542 (OMIM: 144700,171300,193300,263400,60853 ( 213) 1464 271.4 7.6e-73
NP_937799 (OMIM: 144700,171300,193300,263400,60853 ( 172)  792 151.1   1e-36


>>NP_000542 (OMIM: 144700,171300,193300,263400,608537) v  (213 aa)
 initn: 1464 init1: 1464 opt: 1464  Z-score: 1428.8  bits: 271.4 E(85289): 7.6e-73
Smith-Waterman score: 1464; 100.0% identity (100.0% similar) in 213 aa overlap (1-213:1-213)

               10        20        30        40        50        60
pF1KB7 MPRRAENWDEAEVGAEEAGVEEYGPEEDGGEESGAEESGPEESGPEELGAEEEMEAGRPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MPRRAENWDEAEVGAEEAGVEEYGPEEDGGEESGAEESGPEESGPEELGAEEEMEAGRPR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PVLRSVNSREPSQVIFCNRSPRVVLPVWLNFDGEPQPYPTLPPGTGRRIHSYRGHLWLFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PVLRSVNSREPSQVIFCNRSPRVVLPVWLNFDGEPQPYPTLPPGTGRRIHSYRGHLWLFR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 DAGTHDGLLVNQTELFVPSLNVDGQPIFANITLPVYTLKERCLQVVRSLVKPENYRRLDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 DAGTHDGLLVNQTELFVPSLNVDGQPIFANITLPVYTLKERCLQVVRSLVKPENYRRLDI
              130       140       150       160       170       180

              190       200       210   
pF1KB7 VRSLYEDLEDHPNVQKDLERLTQERIAHQRMGD
       :::::::::::::::::::::::::::::::::
NP_000 VRSLYEDLEDHPNVQKDLERLTQERIAHQRMGD
              190       200       210   

>>NP_937799 (OMIM: 144700,171300,193300,263400,608537) v  (172 aa)
 initn: 1167 init1: 792 opt: 792  Z-score: 780.2  bits: 151.1 E(85289): 1e-36
Smith-Waterman score: 1089; 80.8% identity (80.8% similar) in 213 aa overlap (1-213:1-172)

               10        20        30        40        50        60
pF1KB7 MPRRAENWDEAEVGAEEAGVEEYGPEEDGGEESGAEESGPEESGPEELGAEEEMEAGRPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_937 MPRRAENWDEAEVGAEEAGVEEYGPEEDGGEESGAEESGPEESGPEELGAEEEMEAGRPR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PVLRSVNSREPSQVIFCNRSPRVVLPVWLNFDGEPQPYPTLPPGTGRRIHSYRGHLWLFR
       :::::::::::::::::::::::::::::::::::::::::::::::::::::       
NP_937 PVLRSVNSREPSQVIFCNRSPRVVLPVWLNFDGEPQPYPTLPPGTGRRIHSYR-------
               70        80        90       100       110          

              130       140       150       160       170       180
pF1KB7 DAGTHDGLLVNQTELFVPSLNVDGQPIFANITLPVYTLKERCLQVVRSLVKPENYRRLDI
                                         ::::::::::::::::::::::::::
NP_937 ----------------------------------VYTLKERCLQVVRSLVKPENYRRLDI
                                             120       130         

              190       200       210   
pF1KB7 VRSLYEDLEDHPNVQKDLERLTQERIAHQRMGD
       :::::::::::::::::::::::::::::::::
NP_937 VRSLYEDLEDHPNVQKDLERLTQERIAHQRMGD
     140       150       160       170  




213 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 19:01:52 2016 done: Sat Nov  5 19:01:53 2016
 Total Scan time:  6.210 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]