FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7932, 213 aa
  1>>>pF1KB7932 213 - 213 aa - 213 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2164+/-0.000678; mu= 11.4821+/- 0.041
 mean_var=108.3577+/-22.027, 0's: 0 Z-trim(114.3): 12  B-trim: 664 in 1/49
 Lambda= 0.123210
 statistics sampled from 14890 (14901) to 14890 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.797), E-opt: 0.2 (0.458), width:  16
 Scan time:  2.430

The best scores are:                                      opt bits E(32554)
CCDS2597.1 VHL gene_id:7428|Hs108|chr3             ( 213) 1464 269.7 9.6e-73
CCDS2598.1 VHL gene_id:7428|Hs108|chr3             ( 172)  792 150.2 7.4e-37


>>CCDS2597.1 VHL gene_id:7428|Hs108|chr3                  (213 aa)
 initn: 1464 init1: 1464 opt: 1464  Z-score: 1419.5  bits: 269.7 E(32554): 9.6e-73
Smith-Waterman score: 1464; 100.0% identity (100.0% similar) in 213 aa overlap (1-213:1-213)

               10        20        30        40        50        60
pF1KB7 MPRRAENWDEAEVGAEEAGVEEYGPEEDGGEESGAEESGPEESGPEELGAEEEMEAGRPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 MPRRAENWDEAEVGAEEAGVEEYGPEEDGGEESGAEESGPEESGPEELGAEEEMEAGRPR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PVLRSVNSREPSQVIFCNRSPRVVLPVWLNFDGEPQPYPTLPPGTGRRIHSYRGHLWLFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 PVLRSVNSREPSQVIFCNRSPRVVLPVWLNFDGEPQPYPTLPPGTGRRIHSYRGHLWLFR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 DAGTHDGLLVNQTELFVPSLNVDGQPIFANITLPVYTLKERCLQVVRSLVKPENYRRLDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 DAGTHDGLLVNQTELFVPSLNVDGQPIFANITLPVYTLKERCLQVVRSLVKPENYRRLDI
              130       140       150       160       170       180

              190       200       210   
pF1KB7 VRSLYEDLEDHPNVQKDLERLTQERIAHQRMGD
       :::::::::::::::::::::::::::::::::
CCDS25 VRSLYEDLEDHPNVQKDLERLTQERIAHQRMGD
              190       200       210   

>>CCDS2598.1 VHL gene_id:7428|Hs108|chr3                  (172 aa)
 initn: 1167 init1: 792 opt: 792  Z-score: 775.2  bits: 150.2 E(32554): 7.4e-37
Smith-Waterman score: 1089; 80.8% identity (80.8% similar) in 213 aa overlap (1-213:1-172)

               10        20        30        40        50        60
pF1KB7 MPRRAENWDEAEVGAEEAGVEEYGPEEDGGEESGAEESGPEESGPEELGAEEEMEAGRPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 MPRRAENWDEAEVGAEEAGVEEYGPEEDGGEESGAEESGPEESGPEELGAEEEMEAGRPR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PVLRSVNSREPSQVIFCNRSPRVVLPVWLNFDGEPQPYPTLPPGTGRRIHSYRGHLWLFR
       :::::::::::::::::::::::::::::::::::::::::::::::::::::       
CCDS25 PVLRSVNSREPSQVIFCNRSPRVVLPVWLNFDGEPQPYPTLPPGTGRRIHSYR-------
               70        80        90       100       110          

              130       140       150       160       170       180
pF1KB7 DAGTHDGLLVNQTELFVPSLNVDGQPIFANITLPVYTLKERCLQVVRSLVKPENYRRLDI
                                         ::::::::::::::::::::::::::
CCDS25 ----------------------------------VYTLKERCLQVVRSLVKPENYRRLDI
                                             120       130         

              190       200       210   
pF1KB7 VRSLYEDLEDHPNVQKDLERLTQERIAHQRMGD
       :::::::::::::::::::::::::::::::::
CCDS25 VRSLYEDLEDHPNVQKDLERLTQERIAHQRMGD
     140       150       160       170  




213 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 19:01:51 2016 done: Sat Nov  5 19:01:52 2016
 Total Scan time:  2.430 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]