Result of FASTA (omim) for
pF1KB7925
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7925, 192 aa
1>>>pF1KB7925 192 - 192 aa - 192 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.3331+/-0.000274; mu= 0.8384+/- 0.017
mean_var=168.1717+/-33.442, 0's: 0 Z-trim(124.3): 14 B-trim: 0 in 0/56
Lambda= 0.098900
statistics sampled from 45570 (45584) to 45570 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.834), E-opt: 0.2 (0.534), width: 16
Scan time: 7.440
The best scores are: opt bits E(85289)
NP_149042 (OMIM: 300878) doublesex- and mab-3-rela ( 192) 1301 196.2 2.8e-50
XP_016885214 (OMIM: 300878) PREDICTED: doublesex- ( 192) 1301 196.2 2.8e-50
XP_005262344 (OMIM: 300878) PREDICTED: doublesex- ( 192) 1301 196.2 2.8e-50
XP_005262345 (OMIM: 300878) PREDICTED: doublesex- ( 192) 1301 196.2 2.8e-50
XP_011525517 (OMIM: 614806) PREDICTED: doublesex- ( 244) 293 52.4 6.7e-07
XP_011525516 (OMIM: 614806) PREDICTED: doublesex- ( 244) 293 52.4 6.7e-07
NP_001035373 (OMIM: 614806) doublesex- and mab-3-r ( 367) 293 52.5 9.4e-07
XP_016882618 (OMIM: 614806) PREDICTED: doublesex- ( 372) 293 52.5 9.5e-07
XP_016882615 (OMIM: 614806) PREDICTED: doublesex- ( 418) 235 44.3 0.00032
XP_016882614 (OMIM: 614806) PREDICTED: doublesex- ( 418) 235 44.3 0.00032
XP_016882616 (OMIM: 614806) PREDICTED: doublesex- ( 418) 235 44.3 0.00032
XP_016882617 (OMIM: 614806) PREDICTED: doublesex- ( 418) 235 44.3 0.00032
XP_016882613 (OMIM: 614806) PREDICTED: doublesex- ( 421) 235 44.3 0.00033
XP_016882612 (OMIM: 614806) PREDICTED: doublesex- ( 423) 235 44.3 0.00033
>>NP_149042 (OMIM: 300878) doublesex- and mab-3-related (192 aa)
initn: 1301 init1: 1301 opt: 1301 Z-score: 1023.7 bits: 196.2 E(85289): 2.8e-50
Smith-Waterman score: 1301; 100.0% identity (100.0% similar) in 192 aa overlap (1-192:1-192)
10 20 30 40 50 60
pF1KB7 MAAPPKAPIRVRNLTIRAGALTGKENNMLQPETHIFTAPEEGSSQGALLLGQAPEPLSLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 MAAPPKAPIRVRNLTIRAGALTGKENNMLQPETHIFTAPEEGSSQGALLLGQAPEPLSLP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 CTPVTLEQQLVSPSGDPHRAPALPSICSTLILQPCATLDPLLLQPQVPKVSDQALVSAHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 CTPVTLEQQLVSPSGDPHRAPALPSICSTLILQPCATLDPLLLQPQVPKVSDQALVSAHS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 EWQRKLEAAEALLTLRNSAQAPPDSISLHQPCNPPAPAGDKGFQPPSPSLRPRPASSISL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 EWQRKLEAAEALLTLRNSAQAPPDSISLHQPCNPPAPAGDKGFQPPSPSLRPRPASSISL
130 140 150 160 170 180
190
pF1KB7 PIGHLGCISLLS
::::::::::::
NP_149 PIGHLGCISLLS
190
>>XP_016885214 (OMIM: 300878) PREDICTED: doublesex- and (192 aa)
initn: 1301 init1: 1301 opt: 1301 Z-score: 1023.7 bits: 196.2 E(85289): 2.8e-50
Smith-Waterman score: 1301; 100.0% identity (100.0% similar) in 192 aa overlap (1-192:1-192)
10 20 30 40 50 60
pF1KB7 MAAPPKAPIRVRNLTIRAGALTGKENNMLQPETHIFTAPEEGSSQGALLLGQAPEPLSLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAAPPKAPIRVRNLTIRAGALTGKENNMLQPETHIFTAPEEGSSQGALLLGQAPEPLSLP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 CTPVTLEQQLVSPSGDPHRAPALPSICSTLILQPCATLDPLLLQPQVPKVSDQALVSAHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CTPVTLEQQLVSPSGDPHRAPALPSICSTLILQPCATLDPLLLQPQVPKVSDQALVSAHS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 EWQRKLEAAEALLTLRNSAQAPPDSISLHQPCNPPAPAGDKGFQPPSPSLRPRPASSISL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EWQRKLEAAEALLTLRNSAQAPPDSISLHQPCNPPAPAGDKGFQPPSPSLRPRPASSISL
130 140 150 160 170 180
190
pF1KB7 PIGHLGCISLLS
::::::::::::
XP_016 PIGHLGCISLLS
190
>>XP_005262344 (OMIM: 300878) PREDICTED: doublesex- and (192 aa)
initn: 1301 init1: 1301 opt: 1301 Z-score: 1023.7 bits: 196.2 E(85289): 2.8e-50
Smith-Waterman score: 1301; 100.0% identity (100.0% similar) in 192 aa overlap (1-192:1-192)
10 20 30 40 50 60
pF1KB7 MAAPPKAPIRVRNLTIRAGALTGKENNMLQPETHIFTAPEEGSSQGALLLGQAPEPLSLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MAAPPKAPIRVRNLTIRAGALTGKENNMLQPETHIFTAPEEGSSQGALLLGQAPEPLSLP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 CTPVTLEQQLVSPSGDPHRAPALPSICSTLILQPCATLDPLLLQPQVPKVSDQALVSAHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CTPVTLEQQLVSPSGDPHRAPALPSICSTLILQPCATLDPLLLQPQVPKVSDQALVSAHS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 EWQRKLEAAEALLTLRNSAQAPPDSISLHQPCNPPAPAGDKGFQPPSPSLRPRPASSISL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EWQRKLEAAEALLTLRNSAQAPPDSISLHQPCNPPAPAGDKGFQPPSPSLRPRPASSISL
130 140 150 160 170 180
190
pF1KB7 PIGHLGCISLLS
::::::::::::
XP_005 PIGHLGCISLLS
190
>>XP_005262345 (OMIM: 300878) PREDICTED: doublesex- and (192 aa)
initn: 1301 init1: 1301 opt: 1301 Z-score: 1023.7 bits: 196.2 E(85289): 2.8e-50
Smith-Waterman score: 1301; 100.0% identity (100.0% similar) in 192 aa overlap (1-192:1-192)
10 20 30 40 50 60
pF1KB7 MAAPPKAPIRVRNLTIRAGALTGKENNMLQPETHIFTAPEEGSSQGALLLGQAPEPLSLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MAAPPKAPIRVRNLTIRAGALTGKENNMLQPETHIFTAPEEGSSQGALLLGQAPEPLSLP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 CTPVTLEQQLVSPSGDPHRAPALPSICSTLILQPCATLDPLLLQPQVPKVSDQALVSAHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CTPVTLEQQLVSPSGDPHRAPALPSICSTLILQPCATLDPLLLQPQVPKVSDQALVSAHS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 EWQRKLEAAEALLTLRNSAQAPPDSISLHQPCNPPAPAGDKGFQPPSPSLRPRPASSISL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EWQRKLEAAEALLTLRNSAQAPPDSISLHQPCNPPAPAGDKGFQPPSPSLRPRPASSISL
130 140 150 160 170 180
190
pF1KB7 PIGHLGCISLLS
::::::::::::
XP_005 PIGHLGCISLLS
190
>>XP_011525517 (OMIM: 614806) PREDICTED: doublesex- and (244 aa)
initn: 492 init1: 242 opt: 293 Z-score: 244.9 bits: 52.4 E(85289): 6.7e-07
Smith-Waterman score: 456; 47.4% identity (64.0% similar) in 175 aa overlap (28-192:73-244)
10 20 30 40 50
pF1KB7 MAAPPKAPIRVRNLTIRAGALTGKENNMLQPETHIFTAPEEGSSQGALLLGQAPEPL
.: : . : : . :. : : :
XP_011 LSWTPVPPGPWVPGHWLPPGFSMPPPVVCRLLYQEPAVSLPPFPGFDPGTSL--QLPTHG
50 60 70 80 90 100
60 70 80 90 100 110
pF1KB7 SLPCTPVTLEQQLVSP-SGDPHRAPALPSICSTLILQPCATLDPLLLQPQVPKVSDQALV
. : . . :..: ::.:. :. : ::::::::.: ::: ::::. .: : .
XP_011 PFTTCPGS-HPVLTAPLSGEPQGPPSQPRTHSTLILQPCGTPDPLQLQPQASGASCLART
110 120 130 140 150
120 130 140 150 160
pF1KB7 SAHSEWQRKLEAAEALLTLRNSAQAP---------PDSISLHQPCNPPAPAGDKGFQPPS
:. :::: . ::::::. :..:.::: : ::: .::.:::::: .:::: .
XP_011 SGPSEWQLQQEAAEALVGLKDSSQAPRVTPSVPPNPAWISLLHPCGPPAPAGGRGFQPVG
160 170 180 190 200 210
170 180 190
pF1KB7 PSLRPRPASSISLPIGHLGCISLLS
: ::: :: :..: ::.:: :::::
XP_011 PCLRPSPAPSVALHIGRLGSISLLS
220 230 240
>>XP_011525516 (OMIM: 614806) PREDICTED: doublesex- and (244 aa)
initn: 492 init1: 242 opt: 293 Z-score: 244.9 bits: 52.4 E(85289): 6.7e-07
Smith-Waterman score: 456; 47.4% identity (64.0% similar) in 175 aa overlap (28-192:73-244)
10 20 30 40 50
pF1KB7 MAAPPKAPIRVRNLTIRAGALTGKENNMLQPETHIFTAPEEGSSQGALLLGQAPEPL
.: : . : : . :. : : :
XP_011 LSWTPVPPGPWVPGHWLPPGFSMPPPVVCRLLYQEPAVSLPPFPGFDPGTSL--QLPTHG
50 60 70 80 90 100
60 70 80 90 100 110
pF1KB7 SLPCTPVTLEQQLVSP-SGDPHRAPALPSICSTLILQPCATLDPLLLQPQVPKVSDQALV
. : . . :..: ::.:. :. : ::::::::.: ::: ::::. .: : .
XP_011 PFTTCPGS-HPVLTAPLSGEPQGPPSQPRTHSTLILQPCGTPDPLQLQPQASGASCLART
110 120 130 140 150
120 130 140 150 160
pF1KB7 SAHSEWQRKLEAAEALLTLRNSAQAP---------PDSISLHQPCNPPAPAGDKGFQPPS
:. :::: . ::::::. :..:.::: : ::: .::.:::::: .:::: .
XP_011 SGPSEWQLQQEAAEALVGLKDSSQAPRVTPSVPPNPAWISLLHPCGPPAPAGGRGFQPVG
160 170 180 190 200 210
170 180 190
pF1KB7 PSLRPRPASSISLPIGHLGCISLLS
: ::: :: :..: ::.:: :::::
XP_011 PCLRPSPAPSVALHIGRLGSISLLS
220 230 240
>>NP_001035373 (OMIM: 614806) doublesex- and mab-3-relat (367 aa)
initn: 551 init1: 242 opt: 293 Z-score: 242.2 bits: 52.5 E(85289): 9.4e-07
Smith-Waterman score: 456; 47.4% identity (64.0% similar) in 175 aa overlap (28-192:196-367)
10 20 30 40 50
pF1KB7 MAAPPKAPIRVRNLTIRAGALTGKENNMLQPETHIFTAPEEGSSQGALLLGQAPEPL
.: : . : : . :. : : :
NP_001 LSWTPVPPGPWVPGHWLPPGFSMPPPVVCRLLYQEPAVSLPPFPGFDPGTSL--QLPTHG
170 180 190 200 210 220
60 70 80 90 100 110
pF1KB7 SLPCTPVTLEQQLVSP-SGDPHRAPALPSICSTLILQPCATLDPLLLQPQVPKVSDQALV
. : . . :..: ::.:. :. : ::::::::.: ::: ::::. .: : .
NP_001 PFTTCPGS-HPVLTAPLSGEPQGPPSQPRTHSTLILQPCGTPDPLQLQPQASGASCLART
230 240 250 260 270 280
120 130 140 150 160
pF1KB7 SAHSEWQRKLEAAEALLTLRNSAQAP---------PDSISLHQPCNPPAPAGDKGFQPPS
:. :::: . ::::::. :..:.::: : ::: .::.:::::: .:::: .
NP_001 SGPSEWQLQQEAAEALVGLKDSSQAPRVTPSVPPNPAWISLLHPCGPPAPAGGRGFQPVG
290 300 310 320 330 340
170 180 190
pF1KB7 PSLRPRPASSISLPIGHLGCISLLS
: ::: :: :..: ::.:: :::::
NP_001 PCLRPSPAPSVALHIGRLGSISLLS
350 360
>>XP_016882618 (OMIM: 614806) PREDICTED: doublesex- and (372 aa)
initn: 551 init1: 242 opt: 293 Z-score: 242.1 bits: 52.5 E(85289): 9.5e-07
Smith-Waterman score: 456; 47.4% identity (64.0% similar) in 175 aa overlap (28-192:201-372)
10 20 30 40 50
pF1KB7 MAAPPKAPIRVRNLTIRAGALTGKENNMLQPETHIFTAPEEGSSQGALLLGQAPEPL
.: : . : : . :. : : :
XP_016 LSWTPVPPGPWVPGHWLPPGFSMPPPVVCRLLYQEPAVSLPPFPGFDPGTSL--QLPTHG
180 190 200 210 220
60 70 80 90 100 110
pF1KB7 SLPCTPVTLEQQLVSP-SGDPHRAPALPSICSTLILQPCATLDPLLLQPQVPKVSDQALV
. : . . :..: ::.:. :. : ::::::::.: ::: ::::. .: : .
XP_016 PFTTCPGS-HPVLTAPLSGEPQGPPSQPRTHSTLILQPCGTPDPLQLQPQASGASCLART
230 240 250 260 270 280
120 130 140 150 160
pF1KB7 SAHSEWQRKLEAAEALLTLRNSAQAP---------PDSISLHQPCNPPAPAGDKGFQPPS
:. :::: . ::::::. :..:.::: : ::: .::.:::::: .:::: .
XP_016 SGPSEWQLQQEAAEALVGLKDSSQAPRVTPSVPPNPAWISLLHPCGPPAPAGGRGFQPVG
290 300 310 320 330 340
170 180 190
pF1KB7 PSLRPRPASSISLPIGHLGCISLLS
: ::: :: :..: ::.:: :::::
XP_016 PCLRPSPAPSVALHIGRLGSISLLS
350 360 370
>>XP_016882615 (OMIM: 614806) PREDICTED: doublesex- and (418 aa)
initn: 546 init1: 223 opt: 235 Z-score: 196.7 bits: 44.3 E(85289): 0.00032
Smith-Waterman score: 351; 37.6% identity (50.9% similar) in 226 aa overlap (28-192:196-418)
10 20 30 40 50
pF1KB7 MAAPPKAPIRVRNLTIRAGALTGKENNMLQPETHIFTAPEEGSSQGALLLGQAPEPL
.: : . : : . :. : : :
XP_016 LSWTPVPPGPWVPGHWLPPGFSMPPPVVCRLLYQEPAVSLPPFPGFDPGTSL--QLPTHG
170 180 190 200 210 220
60 70 80 90 100
pF1KB7 SLPCTPVTLEQQLVSP-SGDPHRAPALPSICSTLILQPCATLDPLLLQPQV--------P
. : . . :..: ::.:. :. : ::::::::.: ::: ::::: :
XP_016 PFTTCPGS-HPVLTAPLSGEPQGPPSQPRTHSTLILQPCGTPDPLQLQPQVLGKKWDLGP
230 240 250 260 270 280
110 120
pF1KB7 ------------KVSDQ-------------------------------ALVSAHSEWQRK
:... : .:. :::: .
XP_016 WEEVEPGEGKSRKLKEAGAEEHLEGGQKRGFPVCLSPFPLQASGASCLARTSGPSEWQLQ
290 300 310 320 330 340
130 140 150 160 170
pF1KB7 LEAAEALLTLRNSAQAP---------PDSISLHQPCNPPAPAGDKGFQPPSPSLRPRPAS
::::::. :..:.::: : ::: .::.:::::: .:::: .: ::: ::
XP_016 QEAAEALVGLKDSSQAPRVTPSVPPNPAWISLLHPCGPPAPAGGRGFQPVGPCLRPSPAP
350 360 370 380 390 400
180 190
pF1KB7 SISLPIGHLGCISLLS
:..: ::.:: :::::
XP_016 SVALHIGRLGSISLLS
410
>>XP_016882614 (OMIM: 614806) PREDICTED: doublesex- and (418 aa)
initn: 546 init1: 223 opt: 235 Z-score: 196.7 bits: 44.3 E(85289): 0.00032
Smith-Waterman score: 351; 37.6% identity (50.9% similar) in 226 aa overlap (28-192:196-418)
10 20 30 40 50
pF1KB7 MAAPPKAPIRVRNLTIRAGALTGKENNMLQPETHIFTAPEEGSSQGALLLGQAPEPL
.: : . : : . :. : : :
XP_016 LSWTPVPPGPWVPGHWLPPGFSMPPPVVCRLLYQEPAVSLPPFPGFDPGTSL--QLPTHG
170 180 190 200 210 220
60 70 80 90 100
pF1KB7 SLPCTPVTLEQQLVSP-SGDPHRAPALPSICSTLILQPCATLDPLLLQPQV--------P
. : . . :..: ::.:. :. : ::::::::.: ::: ::::: :
XP_016 PFTTCPGS-HPVLTAPLSGEPQGPPSQPRTHSTLILQPCGTPDPLQLQPQVLGKKWDLGP
230 240 250 260 270 280
110 120
pF1KB7 ------------KVSDQ-------------------------------ALVSAHSEWQRK
:... : .:. :::: .
XP_016 WEEVEPGEGKSRKLKEAGAEEHLEGGQKRGFPVCLSPFPLQASGASCLARTSGPSEWQLQ
290 300 310 320 330 340
130 140 150 160 170
pF1KB7 LEAAEALLTLRNSAQAP---------PDSISLHQPCNPPAPAGDKGFQPPSPSLRPRPAS
::::::. :..:.::: : ::: .::.:::::: .:::: .: ::: ::
XP_016 QEAAEALVGLKDSSQAPRVTPSVPPNPAWISLLHPCGPPAPAGGRGFQPVGPCLRPSPAP
350 360 370 380 390 400
180 190
pF1KB7 SISLPIGHLGCISLLS
:..: ::.:: :::::
XP_016 SVALHIGRLGSISLLS
410
192 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 10:10:31 2016 done: Sat Nov 5 10:10:32 2016
Total Scan time: 7.440 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]