FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7919, 180 aa
  1>>>pF1KB7919 180 - 180 aa - 180 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0898+/-0.00066; mu= 6.4004+/- 0.040
 mean_var=123.3011+/-23.978, 0's: 0 Z-trim(115.1): 12  B-trim: 0 in 0/50
 Lambda= 0.115502
 statistics sampled from 15658 (15668) to 15658 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.795), E-opt: 0.2 (0.481), width:  16
 Scan time:  2.140

The best scores are:                                      opt bits E(32554)
CCDS31775.1 YAF2 gene_id:10138|Hs108|chr12         ( 180) 1188 207.6 3.3e-54
CCDS53778.1 YAF2 gene_id:10138|Hs108|chr12         ( 138)  830 147.9 2.4e-36
CCDS53779.1 YAF2 gene_id:10138|Hs108|chr12         ( 204)  823 146.8 7.5e-36
CCDS53780.1 YAF2 gene_id:10138|Hs108|chr12         ( 117)  388 74.2 3.1e-14


>>CCDS31775.1 YAF2 gene_id:10138|Hs108|chr12              (180 aa)
 initn: 1188 init1: 1188 opt: 1188  Z-score: 1086.7  bits: 207.6 E(32554): 3.3e-54
Smith-Waterman score: 1188; 100.0% identity (100.0% similar) in 180 aa overlap (1-180:1-180)

               10        20        30        40        50        60
pF1KB7 MGDKKSPTRPKRQPKPSSDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVSQLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MGDKKSPTRPKRQPKPSSDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVSQLV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 AQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 GDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH
              130       140       150       160       170       180

>>CCDS53778.1 YAF2 gene_id:10138|Hs108|chr12              (138 aa)
 initn: 830 init1: 830 opt: 830  Z-score: 765.9  bits: 147.9 E(32554): 2.4e-36
Smith-Waterman score: 830; 97.8% identity (98.5% similar) in 135 aa overlap (46-180:4-138)

          20        30        40        50        60        70     
pF1KB7 PSSDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVSQLVAQQVTQQFVPPTQSK
                                     : . ::::::::::::::::::::::::::
CCDS53                            MGDKKSPTRKPRPVSQLVAQQVTQQFVPPTQSK
                                          10        20        30   

          80        90       100       110       120       130     
pF1KB7 KEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 KEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKTK
            40        50        60        70        80        90   

         140       150       160       170       180
pF1KB7 SPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH
           100       110       120       130        

>>CCDS53779.1 YAF2 gene_id:10138|Hs108|chr12              (204 aa)
 initn: 823 init1: 823 opt: 823  Z-score: 757.2  bits: 146.8 E(32554): 7.5e-36
Smith-Waterman score: 1130; 88.2% identity (88.2% similar) in 204 aa overlap (1-180:1-204)

               10        20        30        40        50          
pF1KB7 MGDKKSPTRPKRQPKPSSDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTR---------
       :::::::::::::::::::::::::::::::::::::::::::::::::::         
CCDS53 MGDKKSPTRPKRQPKPSSDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRSTLFEVIVS
               10        20        30        40        50        60

                             60        70        80        90      
pF1KB7 ---------------KPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKN
                      :::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ASRTKEPLKFPISGRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKN
               70        80        90       100       110       120

        100       110       120       130       140       150      
pF1KB7 SHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSD
              130       140       150       160       170       180

        160       170       180
pF1KB7 NTERGMSRSSSPRGEASSLNGESH
       ::::::::::::::::::::::::
CCDS53 NTERGMSRSSSPRGEASSLNGESH
              190       200    

>>CCDS53780.1 YAF2 gene_id:10138|Hs108|chr12              (117 aa)
 initn: 384 init1: 384 opt: 388  Z-score: 369.0  bits: 74.2 E(32554): 3.1e-14
Smith-Waterman score: 388; 56.6% identity (78.3% similar) in 106 aa overlap (1-103:1-106)

               10        20        30        40        50        60
pF1KB7 MGDKKSPTRPKRQPKPSSDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVSQLV
       :::::::::::::::::::::::::::::::::::::::::::::::::::  .  ..::
CCDS53 MGDKKSPTRPKRQPKPSSDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRDSKEGGKLV
               10        20        30        40        50        60

               70         80        90         100       110       
pF1KB7 AQQVTQQFVPPT-QSKKEKKDKVEKEKSEKETTSKKNS--HKKTRPRLKNVDRSSAQHLE
       . ....  :  : ...    .. ::...:  . ... .  :. . :              
CCDS53 SYSTASLGVRGTLRNRVGGGSSEEKKQAEYLAPGRRRNIVHRGVGPGQRSGPSLKEA   
               70        80        90       100       110          

       120       130       140       150       160       170       
pF1KB7 VTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNG




180 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 16:25:46 2016 done: Sat Nov  5 16:25:47 2016
 Total Scan time:  2.140 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]