FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7913, 161 aa
  1>>>pF1KB7913 161 - 161 aa - 161 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9282+/-0.000269; mu= 10.8267+/- 0.017
 mean_var=88.3737+/-17.547, 0's: 0 Z-trim(122.2): 23  B-trim: 313 in 2/56
 Lambda= 0.136431
 statistics sampled from 39897 (39920) to 39897 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.807), E-opt: 0.2 (0.468), width:  16
 Scan time:  6.100

The best scores are:                                      opt bits E(85289)
NP_001128690 (OMIM: 600773) transcription initiati ( 161) 1059 217.0 1.1e-56
NP_005635 (OMIM: 600773) transcription initiation  ( 161) 1059 217.0 1.1e-56
XP_016857675 (OMIM: 600773) PREDICTED: transcripti ( 241) 1059 217.1 1.5e-56


>>NP_001128690 (OMIM: 600773) transcription initiation f  (161 aa)
 initn: 1059 init1: 1059 opt: 1059  Z-score: 1138.9  bits: 217.0 E(85289): 1.1e-56
Smith-Waterman score: 1059; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:1-161)

               10        20        30        40        50        60
pF1KB7 MNQFGPSALINLSNFSSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNQFGPSALINLSNFSSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 KKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHL
               70        80        90       100       110       120

              130       140       150       160 
pF1KB7 ERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKTTKK
       :::::::::::::::::::::::::::::::::::::::::
NP_001 ERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKTTKK
              130       140       150       160 

>>NP_005635 (OMIM: 600773) transcription initiation fact  (161 aa)
 initn: 1059 init1: 1059 opt: 1059  Z-score: 1138.9  bits: 217.0 E(85289): 1.1e-56
Smith-Waterman score: 1059; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:1-161)

               10        20        30        40        50        60
pF1KB7 MNQFGPSALINLSNFSSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MNQFGPSALINLSNFSSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 KKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 KKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHL
               70        80        90       100       110       120

              130       140       150       160 
pF1KB7 ERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKTTKK
       :::::::::::::::::::::::::::::::::::::::::
NP_005 ERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKTTKK
              130       140       150       160 

>>XP_016857675 (OMIM: 600773) PREDICTED: transcription i  (241 aa)
 initn: 1059 init1: 1059 opt: 1059  Z-score: 1136.3  bits: 217.1 E(85289): 1.5e-56
Smith-Waterman score: 1059; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:81-241)

                                             10        20        30
pF1KB7                               MNQFGPSALINLSNFSSIKPEPASTPPQGS
                                     ::::::::::::::::::::::::::::::
XP_016 AALIGLGPHSSKKKQDLDKLYELKSKARQIMNQFGPSALINLSNFSSIKPEPASTPPQGS
               60        70        80        90       100       110

               40        50        60        70        80        90
pF1KB7 MANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADD
              120       130       140       150       160       170

              100       110       120       130       140       150
pF1KB7 FIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEEIRPYKKACTTEAHKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEEIRPYKKACTTEAHKQ
              180       190       200       210       220       230

              160 
pF1KB7 RMALIRKTTKK
       :::::::::::
XP_016 RMALIRKTTKK
              240 




161 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:36:18 2016 done: Sat Nov  5 14:36:19 2016
 Total Scan time:  6.100 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]