FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7913, 161 aa
  1>>>pF1KB7913 161 - 161 aa - 161 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5951+/-0.0006; mu= 12.8357+/- 0.037
 mean_var=88.2914+/-17.331, 0's: 0 Z-trim(114.7): 20  B-trim: 188 in 1/54
 Lambda= 0.136494
 statistics sampled from 15194 (15214) to 15194 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.808), E-opt: 0.2 (0.467), width:  16
 Scan time:  2.070

The best scores are:                                      opt bits E(32554)
CCDS326.1 TAF12 gene_id:6883|Hs108|chr1            ( 161) 1059 217.0   4e-57


>>CCDS326.1 TAF12 gene_id:6883|Hs108|chr1                 (161 aa)
 initn: 1059 init1: 1059 opt: 1059  Z-score: 1139.0  bits: 217.0 E(32554): 4e-57
Smith-Waterman score: 1059; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:1-161)

               10        20        30        40        50        60
pF1KB7 MNQFGPSALINLSNFSSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MNQFGPSALINLSNFSSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 KKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHL
               70        80        90       100       110       120

              130       140       150       160 
pF1KB7 ERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKTTKK
       :::::::::::::::::::::::::::::::::::::::::
CCDS32 ERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKTTKK
              130       140       150       160 




161 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:36:18 2016 done: Sat Nov  5 14:36:18 2016
 Total Scan time:  2.070 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]