Result of FASTA (omim) for
pF1KB7911
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7911, 147 aa
1>>>pF1KB7911 147 - 147 aa - 147 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.2011+/-0.000398; mu= -5.2236+/- 0.025
mean_var=242.7538+/-48.740, 0's: 0 Z-trim(120.7): 8 B-trim: 786 in 2/52
Lambda= 0.082317
statistics sampled from 36219 (36227) to 36219 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.746), E-opt: 0.2 (0.425), width: 16
Scan time: 4.690
The best scores are: opt bits E(85289)
NP_001265184 (OMIM: 607267) DNA polymerase epsilon ( 147) 924 121.4 5.4e-28
NP_059139 (OMIM: 607267) DNA polymerase epsilon su ( 147) 924 121.4 5.4e-28
NP_006157 (OMIM: 189904) nuclear transcription fac ( 207) 233 39.4 0.0035
XP_005268966 (OMIM: 189904) PREDICTED: nuclear tra ( 208) 233 39.4 0.0035
XP_005268965 (OMIM: 189904) PREDICTED: nuclear tra ( 208) 233 39.4 0.0035
XP_005268967 (OMIM: 189904) PREDICTED: nuclear tra ( 208) 233 39.4 0.0035
>>NP_001265184 (OMIM: 607267) DNA polymerase epsilon sub (147 aa)
initn: 924 init1: 924 opt: 924 Z-score: 623.6 bits: 121.4 E(85289): 5.4e-28
Smith-Waterman score: 924; 100.0% identity (100.0% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KB7 MAERPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAERPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQKKKDKDKKTDSEEQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQKKKDKDKKTDSEEQD
70 80 90 100 110 120
130 140
pF1KB7 KSRDEDNDEDEERLEEEEQNEEEEVDN
:::::::::::::::::::::::::::
NP_001 KSRDEDNDEDEERLEEEEQNEEEEVDN
130 140
>>NP_059139 (OMIM: 607267) DNA polymerase epsilon subuni (147 aa)
initn: 924 init1: 924 opt: 924 Z-score: 623.6 bits: 121.4 E(85289): 5.4e-28
Smith-Waterman score: 924; 100.0% identity (100.0% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KB7 MAERPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_059 MAERPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQKKKDKDKKTDSEEQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_059 RKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQKKKDKDKKTDSEEQD
70 80 90 100 110 120
130 140
pF1KB7 KSRDEDNDEDEERLEEEEQNEEEEVDN
:::::::::::::::::::::::::::
NP_059 KSRDEDNDEDEERLEEEEQNEEEEVDN
130 140
>>NP_006157 (OMIM: 189904) nuclear transcription factor (207 aa)
initn: 217 init1: 217 opt: 233 Z-score: 178.1 bits: 39.4 E(85289): 0.0035
Smith-Waterman score: 233; 38.1% identity (71.1% similar) in 97 aa overlap (4-100:53-149)
10 20 30
pF1KB7 MAERPEDLNLPNAVITRIIKEALPDGVNISKEA
: .:. :: : ..::.:.:.:. .:.:.:
NP_006 GGSHYVIQPHDDTEDSMNDHEDTNGSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDA
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB7 RSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYR
. ... .: :. . :: :.. . ::::.:. :.: :: . :. .: ::: :. .:
NP_006 KECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFR
90 100 110 120 130 140
100 110 120 130 140
pF1KB7 REQKGKKEASEQKKKDKDKKTDSEEQDKSRDEDNDEDEERLEEEEQNEEEEVDN
. .::.:
NP_006 EAMKGEKGIGGAVTATDGLSEELTEEAFTNQLPAGLITTDGQQQNVMVYTTSYQQISGVQ
150 160 170 180 190 200
>>XP_005268966 (OMIM: 189904) PREDICTED: nuclear transcr (208 aa)
initn: 217 init1: 217 opt: 233 Z-score: 178.1 bits: 39.4 E(85289): 0.0035
Smith-Waterman score: 233; 38.1% identity (71.1% similar) in 97 aa overlap (4-100:54-150)
10 20 30
pF1KB7 MAERPEDLNLPNAVITRIIKEALPDGVNISKEA
: .:. :: : ..::.:.:.:. .:.:.:
XP_005 GGSHYVIQPHDDTEDSMNDHEDTNGSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDA
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB7 RSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYR
. ... .: :. . :: :.. . ::::.:. :.: :: . :. .: ::: :. .:
XP_005 KECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFR
90 100 110 120 130 140
100 110 120 130 140
pF1KB7 REQKGKKEASEQKKKDKDKKTDSEEQDKSRDEDNDEDEERLEEEEQNEEEEVDN
. .::.:
XP_005 EAMKGEKGIGGAVTATDGLSEELTEEAFTNQLPAGLITTDGQQQNVMVYTTSYQQISGVQ
150 160 170 180 190 200
>>XP_005268965 (OMIM: 189904) PREDICTED: nuclear transcr (208 aa)
initn: 217 init1: 217 opt: 233 Z-score: 178.1 bits: 39.4 E(85289): 0.0035
Smith-Waterman score: 233; 38.1% identity (71.1% similar) in 97 aa overlap (4-100:54-150)
10 20 30
pF1KB7 MAERPEDLNLPNAVITRIIKEALPDGVNISKEA
: .:. :: : ..::.:.:.:. .:.:.:
XP_005 GGSHYVIQPHDDTEDSMNDHEDTNGSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDA
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB7 RSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYR
. ... .: :. . :: :.. . ::::.:. :.: :: . :. .: ::: :. .:
XP_005 KECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFR
90 100 110 120 130 140
100 110 120 130 140
pF1KB7 REQKGKKEASEQKKKDKDKKTDSEEQDKSRDEDNDEDEERLEEEEQNEEEEVDN
. .::.:
XP_005 EAMKGEKGIGGAVTATDGLSEELTEEAFTNQLPAGLITTDGQQQNVMVYTTSYQQISGVQ
150 160 170 180 190 200
>>XP_005268967 (OMIM: 189904) PREDICTED: nuclear transcr (208 aa)
initn: 217 init1: 217 opt: 233 Z-score: 178.1 bits: 39.4 E(85289): 0.0035
Smith-Waterman score: 233; 38.1% identity (71.1% similar) in 97 aa overlap (4-100:54-150)
10 20 30
pF1KB7 MAERPEDLNLPNAVITRIIKEALPDGVNISKEA
: .:. :: : ..::.:.:.:. .:.:.:
XP_005 GGSHYVIQPHDDTEDSMNDHEDTNGSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDA
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB7 RSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYR
. ... .: :. . :: :.. . ::::.:. :.: :: . :. .: ::: :. .:
XP_005 KECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFR
90 100 110 120 130 140
100 110 120 130 140
pF1KB7 REQKGKKEASEQKKKDKDKKTDSEEQDKSRDEDNDEDEERLEEEEQNEEEEVDN
. .::.:
XP_005 EAMKGEKGIGGAVTATDGLSEELTEEAFTNQLPAGLITTDGQQQNVMVYTTSYQQISGVQ
150 160 170 180 190 200
147 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 14:35:23 2016 done: Sat Nov 5 14:35:24 2016
Total Scan time: 4.690 Total Display time: -0.040
Function used was FASTA [36.3.4 Apr, 2011]