FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7909, 134 aa
  1>>>pF1KB7909 134 - 134 aa - 134 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5548+/-0.000253; mu= 12.0278+/- 0.016
 mean_var=93.1121+/-18.997, 0's: 0 Z-trim(122.8): 2  B-trim: 534 in 1/57
 Lambda= 0.132914
 statistics sampled from 41537 (41539) to 41537 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.835), E-opt: 0.2 (0.487), width:  16
 Scan time:  5.500

The best scores are:                                      opt bits E(85289)
NP_056955 (OMIM: 616698) zinc finger protein 593 [ ( 134)  917 184.3   5e-47
XP_016856887 (OMIM: 616698) PREDICTED: zinc finger ( 156)  626 128.6 3.5e-30


>>NP_056955 (OMIM: 616698) zinc finger protein 593 [Homo  (134 aa)
 initn: 917 init1: 917 opt: 917  Z-score: 965.3  bits: 184.3 E(85289): 5e-47
Smith-Waterman score: 917; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134)

               10        20        30        40        50        60
pF1KB7 MGRSRRTGAHRAHSLARQMKAKRRRPDLDEIHRELRPQGSARPQPDPNAEFDPDLPGGGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MGRSRRTGAHRAHSLARQMKAKRRRPDLDEIHRELRPQGSARPQPDPNAEFDPDLPGGGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 HRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSVEPYSQEEAERAAGMGSYVPPRRLAVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 HRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSVEPYSQEEAERAAGMGSYVPPRRLAVP
               70        80        90       100       110       120

              130    
pF1KB7 TEVSTEVPEMDTST
       ::::::::::::::
NP_056 TEVSTEVPEMDTST
              130    

>>XP_016856887 (OMIM: 616698) PREDICTED: zinc finger pro  (156 aa)
 initn: 626 init1: 626 opt: 626  Z-score: 662.8  bits: 128.6 E(85289): 3.5e-30
Smith-Waterman score: 626; 86.7% identity (91.4% similar) in 105 aa overlap (1-105:1-105)

               10        20        30        40        50        60
pF1KB7 MGRSRRTGAHRAHSLARQMKAKRRRPDLDEIHRELRPQGSARPQPDPNAEFDPDLPGGGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGRSRRTGAHRAHSLARQMKAKRRRPDLDEIHRELRPQGSARPQPDPNAEFDPDLPGGGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 HRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSVEPYSQEEAERAAGMGSYVPPRRLAVP
       :::::::::::::::::::::::::::: . .    ..   :.::               
XP_016 HRCLACARYFIDSTNLKTHFRSKDHKKRYEGVRRGLMDGCSADRALTWSAPNSCFSFSQA
               70        80        90       100       110       120

              130                          
pF1KB7 TEVSTEVPEMDTST                      
                                           
XP_016 EAAERRALQSGRGGEGSGYGILCAPQAAGSAHGSVH
              130       140       150      




134 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 10:09:24 2016 done: Sat Nov  5 10:09:25 2016
 Total Scan time:  5.500 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]