FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7905, 124 aa
  1>>>pF1KB7905 124 - 124 aa - 124 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8207+/-0.000602; mu= 13.6734+/- 0.037
 mean_var=60.7932+/-11.677, 0's: 0 Z-trim(111.4): 11  B-trim: 0 in 0/51
 Lambda= 0.164493
 statistics sampled from 12373 (12377) to 12373 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.38), width:  16
 Scan time:  1.430

The best scores are:                                      opt bits E(32554)
CCDS30788.1 TAF13 gene_id:6884|Hs108|chr1          ( 124)  816 201.0 1.5e-52


>>CCDS30788.1 TAF13 gene_id:6884|Hs108|chr1               (124 aa)
 initn: 816 init1: 816 opt: 816  Z-score: 1056.8  bits: 201.0 E(32554): 1.5e-52
Smith-Waterman score: 816; 100.0% identity (100.0% similar) in 124 aa overlap (1-124:1-124)

               10        20        30        40        50        60
pF1KB7 MADEEEDPTFEEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MADEEEDPTFEEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 VIEFITEMTHKAMSIGRQGRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFDEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 VIEFITEMTHKAMSIGRQGRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFDEA
               70        80        90       100       110       120

           
pF1KB7 NYGS
       ::::
CCDS30 NYGS
           




124 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 19:47:56 2016 done: Sat Nov  5 19:47:56 2016
 Total Scan time:  1.430 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]