FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7904, 328 aa
  1>>>pF1KB7904 328 - 328 aa - 328 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2646+/-0.00105; mu= 10.9464+/- 0.063
 mean_var=72.0700+/-14.092, 0's: 0 Z-trim(103.8): 19  B-trim: 46 in 1/49
 Lambda= 0.151077
 statistics sampled from 7569 (7574) to 7569 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.607), E-opt: 0.2 (0.233), width:  16
 Scan time:  2.530

The best scores are:                                      opt bits E(32554)
CCDS34466.1 SUPT3H gene_id:8464|Hs108|chr6         ( 328) 2139 475.6 2.4e-134
CCDS34465.1 SUPT3H gene_id:8464|Hs108|chr6         ( 317) 1833 408.9 2.8e-114
CCDS75464.1 SUPT3H gene_id:8464|Hs108|chr6         ( 165) 1093 247.5 5.4e-66


>>CCDS34466.1 SUPT3H gene_id:8464|Hs108|chr6              (328 aa)
 initn: 2139 init1: 2139 opt: 2139  Z-score: 2525.3  bits: 475.6 E(32554): 2.4e-134
Smith-Waterman score: 2139; 100.0% identity (100.0% similar) in 328 aa overlap (1-328:1-328)

               10        20        30        40        50        60
pF1KB7 MVVFGTTFFNFDSFIGKTDSIEIIGKSVFPYCYHNILPLLNDSGRYSLGDARRPLHETAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MVVFGTTFFNFDSFIGKTDSIEIIGKSVFPYCYHNILPLLNDSGRYSLGDARRPLHETAV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LVEDVVHTQLINLLQQAAEVSQLRGARVITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LVEDVVHTQLINLLQQAAEVSQLRGARVITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 IVKGIDEDDLLEDKLSGSNNANKRQKIAQDFLNSIDQTGELLAMFEDDEIDEVKQERMER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 IVKGIDEDDLLEDKLSGSNNANKRQKIAQDFLNSIDQTGELLAMFEDDEIDEVKQERMER
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 AERQTRIMDSAQYAEFCESRQLSFSKKASKFRDWLDCSSMEIKPNVVAMEILAYLAYETV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 AERQTRIMDSAQYAEFCESRQLSFSKKASKFRDWLDCSSMEIKPNVVAMEILAYLAYETV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 AQLVDLALLVRQDMVTKAGDPFSHAISATFIQYHNSAESTAACGVEAHSDAIQPCHIREA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 AQLVDLALLVRQDMVTKAGDPFSHAISATFIQYHNSAESTAACGVEAHSDAIQPCHIREA
              250       260       270       280       290       300

              310       320        
pF1KB7 IRRYSHRIGPLSPFTNAYRRNGMAFLAC
       ::::::::::::::::::::::::::::
CCDS34 IRRYSHRIGPLSPFTNAYRRNGMAFLAC
              310       320        

>>CCDS34465.1 SUPT3H gene_id:8464|Hs108|chr6              (317 aa)
 initn: 1833 init1: 1833 opt: 1833  Z-score: 2165.1  bits: 408.9 E(32554): 2.8e-114
Smith-Waterman score: 1833; 100.0% identity (100.0% similar) in 283 aa overlap (46-328:35-317)

          20        30        40        50        60        70     
pF1KB7 GKTDSIEIIGKSVFPYCYHNILPLLNDSGRYSLGDARRPLHETAVLVEDVVHTQLINLLQ
                                     ::::::::::::::::::::::::::::::
CCDS34 AASPMSTATSSSGRSTGKSISFATELQSMMYSLGDARRPLHETAVLVEDVVHTQLINLLQ
           10        20        30        40        50        60    

          80        90       100       110       120       130     
pF1KB7 QAAEVSQLRGARVITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGIDEDDLLEDKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QAAEVSQLRGARVITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGIDEDDLLEDKL
           70        80        90       100       110       120    

         140       150       160       170       180       190     
pF1KB7 SGSNNANKRQKIAQDFLNSIDQTGELLAMFEDDEIDEVKQERMERAERQTRIMDSAQYAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SGSNNANKRQKIAQDFLNSIDQTGELLAMFEDDEIDEVKQERMERAERQTRIMDSAQYAE
          130       140       150       160       170       180    

         200       210       220       230       240       250     
pF1KB7 FCESRQLSFSKKASKFRDWLDCSSMEIKPNVVAMEILAYLAYETVAQLVDLALLVRQDMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FCESRQLSFSKKASKFRDWLDCSSMEIKPNVVAMEILAYLAYETVAQLVDLALLVRQDMV
          190       200       210       220       230       240    

         260       270       280       290       300       310     
pF1KB7 TKAGDPFSHAISATFIQYHNSAESTAACGVEAHSDAIQPCHIREAIRRYSHRIGPLSPFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TKAGDPFSHAISATFIQYHNSAESTAACGVEAHSDAIQPCHIREAIRRYSHRIGPLSPFT
          250       260       270       280       290       300    

         320        
pF1KB7 NAYRRNGMAFLAC
       :::::::::::::
CCDS34 NAYRRNGMAFLAC
          310       

>>CCDS75464.1 SUPT3H gene_id:8464|Hs108|chr6              (165 aa)
 initn: 1093 init1: 1093 opt: 1093  Z-score: 1298.3  bits: 247.5 E(32554): 5.4e-66
Smith-Waterman score: 1093; 100.0% identity (100.0% similar) in 165 aa overlap (164-328:1-165)

           140       150       160       170       180       190   
pF1KB7 KLSGSNNANKRQKIAQDFLNSIDQTGELLAMFEDDEIDEVKQERMERAERQTRIMDSAQY
                                     ::::::::::::::::::::::::::::::
CCDS75                               MFEDDEIDEVKQERMERAERQTRIMDSAQY
                                             10        20        30

           200       210       220       230       240       250   
pF1KB7 AEFCESRQLSFSKKASKFRDWLDCSSMEIKPNVVAMEILAYLAYETVAQLVDLALLVRQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 AEFCESRQLSFSKKASKFRDWLDCSSMEIKPNVVAMEILAYLAYETVAQLVDLALLVRQD
               40        50        60        70        80        90

           260       270       280       290       300       310   
pF1KB7 MVTKAGDPFSHAISATFIQYHNSAESTAACGVEAHSDAIQPCHIREAIRRYSHRIGPLSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MVTKAGDPFSHAISATFIQYHNSAESTAACGVEAHSDAIQPCHIREAIRRYSHRIGPLSP
              100       110       120       130       140       150

           320        
pF1KB7 FTNAYRRNGMAFLAC
       :::::::::::::::
CCDS75 FTNAYRRNGMAFLAC
              160     




328 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:34:41 2016 done: Sat Nov  5 14:34:42 2016
 Total Scan time:  2.530 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]