FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7894, 656 aa
  1>>>pF1KB7894 656 - 656 aa - 656 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7755+/-0.000799; mu= 10.6490+/- 0.048
 mean_var=178.4668+/-35.429, 0's: 0 Z-trim(114.7): 55  B-trim: 95 in 1/51
 Lambda= 0.096005
 statistics sampled from 15159 (15213) to 15159 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.467), width:  16
 Scan time:  3.550

The best scores are:                                      opt bits E(32554)
CCDS11945.1 CXXC1 gene_id:30827|Hs108|chr18        ( 656) 4677 660.0  3e-189
CCDS45866.1 CXXC1 gene_id:30827|Hs108|chr18        ( 660) 4659 657.5 1.7e-188


>>CCDS11945.1 CXXC1 gene_id:30827|Hs108|chr18             (656 aa)
 initn: 4677 init1: 4677 opt: 4677  Z-score: 3511.2  bits: 660.0 E(32554): 3e-189
Smith-Waterman score: 4677; 100.0% identity (100.0% similar) in 656 aa overlap (1-656:1-656)

               10        20        30        40        50        60
pF1KB7 MEGDGSDPEPPDAGEDSKSENGENAPIYCICRKPDINCFMIGCDNCNEWFHGDCIRITEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MEGDGSDPEPPDAGEDSKSENGENAPIYCICRKPDINCFMIGCDNCNEWFHGDCIRITEK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 MAKAIREWYCRECREKDPKLEIRYRHKKSRERDGNERDSSEPRDEGGGRKRPVPDPDLQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAKAIREWYCRECREKDPKLEIRYRHKKSRERDGNERDSSEPRDEGGGRKRPVPDPDLQR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 RAGSGTGVGAMLARGSASPHKSSPQPLVATPSQHHQQQQQQIKRSARMCGECEACRRTED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RAGSGTGVGAMLARGSASPHKSSPQPLVATPSQHHQQQQQQIKRSARMCGECEACRRTED
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 CGHCDFCRDMKKFGGPNKIRQKCRLRQCQLRARESYKYFPSSLSPVTPSESLPRPRRPLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 CGHCDFCRDMKKFGGPNKIRQKCRLRQCQLRARESYKYFPSSLSPVTPSESLPRPRRPLP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 TQQQPQPSQKLGRIREDEGAVASSTVKEPPEATATPEPLSDEDLPLDPDLYQDFCAGAFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TQQQPQPSQKLGRIREDEGAVASSTVKEPPEATATPEPLSDEDLPLDPDLYQDFCAGAFD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 DHGLPWMSDTEESPFLDPALRKRAVKVKHVKRREKKSEKKKEERYKRHRQKQKHKDKWKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DHGLPWMSDTEESPFLDPALRKRAVKVKHVKRREKKSEKKKEERYKRHRQKQKHKDKWKH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 PERADAKDPASLPQCLGPGCVRPAQPSSKYCSDDCGMKLAANRIYEILPQRIQQWQQSPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PERADAKDPASLPQCLGPGCVRPAQPSSKYCSDDCGMKLAANRIYEILPQRIQQWQQSPC
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 IAEEHGKKLLERIRREQQSARTRLQEMERRFHELEAIILRAKQQAVREDEESNEGDSDDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IAEEHGKKLLERIRREQQSARTRLQEMERRFHELEAIILRAKQQAVREDEESNEGDSDDT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB7 DLQIFCVSCGHPINPRVALRHMERCYAKYESQTSFGSMYPTRIEGATRLFCDVYNPQSKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DLQIFCVSCGHPINPRVALRHMERCYAKYESQTSFGSMYPTRIEGATRLFCDVYNPQSKT
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB7 YCKRLQVLCPEHSRDPKVPADEVCGCPLVRDVFELTGDFCRLPKRQCNRHYCWEKLRRAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YCKRLQVLCPEHSRDPKVPADEVCGCPLVRDVFELTGDFCRLPKRQCNRHYCWEKLRRAE
              550       560       570       580       590       600

              610       620       630       640       650      
pF1KB7 VDLERVRVWYKLDELFEQERNVRTAMTNRAGLLALMLHQTIQHDPLTTDLRSSADR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VDLERVRVWYKLDELFEQERNVRTAMTNRAGLLALMLHQTIQHDPLTTDLRSSADR
              610       620       630       640       650      

>>CCDS45866.1 CXXC1 gene_id:30827|Hs108|chr18             (660 aa)
 initn: 2553 init1: 2481 opt: 4659  Z-score: 3497.7  bits: 657.5 E(32554): 1.7e-188
Smith-Waterman score: 4659; 99.4% identity (99.4% similar) in 660 aa overlap (1-656:1-660)

               10        20        30        40        50        60
pF1KB7 MEGDGSDPEPPDAGEDSKSENGENAPIYCICRKPDINCFMIGCDNCNEWFHGDCIRITEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MEGDGSDPEPPDAGEDSKSENGENAPIYCICRKPDINCFMIGCDNCNEWFHGDCIRITEK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 MAKAIREWYCRECREKDPKLEIRYRHKKSRERDGNERDSSEPRDEGGGRKRPVPDPDLQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MAKAIREWYCRECREKDPKLEIRYRHKKSRERDGNERDSSEPRDEGGGRKRPVPDPDLQR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 RAGSGTGVGAMLARGSASPHKSSPQPLVATPSQHHQQQQQQIKRSARMCGECEACRRTED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RAGSGTGVGAMLARGSASPHKSSPQPLVATPSQHHQQQQQQIKRSARMCGECEACRRTED
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 CGHCDFCRDMKKFGGPNKIRQKCRLRQCQLRARESYKYFPSSLSPVTPSESLPRPRRPLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 CGHCDFCRDMKKFGGPNKIRQKCRLRQCQLRARESYKYFPSSLSPVTPSESLPRPRRPLP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 TQQQPQPSQKLGRIREDEGAVASSTVKEPPEATATPEPLSDEDLPLDPDLYQDFCAGAFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TQQQPQPSQKLGRIREDEGAVASSTVKEPPEATATPEPLSDEDLPLDPDLYQDFCAGAFD
              250       260       270       280       290       300

              310       320       330       340           350      
pF1KB7 DHGLPWMSDTEESPFLDPALRKRAVKVKHVKRREKKSEKK----KEERYKRHRQKQKHKD
       ::::::::::::::::::::::::::::::::::::::::    ::::::::::::::::
CCDS45 DHGLPWMSDTEESPFLDPALRKRAVKVKHVKRREKKSEKKVMERKEERYKRHRQKQKHKD
              310       320       330       340       350       360

        360       370       380       390       400       410      
pF1KB7 KWKHPERADAKDPASLPQCLGPGCVRPAQPSSKYCSDDCGMKLAANRIYEILPQRIQQWQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KWKHPERADAKDPASLPQCLGPGCVRPAQPSSKYCSDDCGMKLAANRIYEILPQRIQQWQ
              370       380       390       400       410       420

        420       430       440       450       460       470      
pF1KB7 QSPCIAEEHGKKLLERIRREQQSARTRLQEMERRFHELEAIILRAKQQAVREDEESNEGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QSPCIAEEHGKKLLERIRREQQSARTRLQEMERRFHELEAIILRAKQQAVREDEESNEGD
              430       440       450       460       470       480

        480       490       500       510       520       530      
pF1KB7 SDDTDLQIFCVSCGHPINPRVALRHMERCYAKYESQTSFGSMYPTRIEGATRLFCDVYNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SDDTDLQIFCVSCGHPINPRVALRHMERCYAKYESQTSFGSMYPTRIEGATRLFCDVYNP
              490       500       510       520       530       540

        540       550       560       570       580       590      
pF1KB7 QSKTYCKRLQVLCPEHSRDPKVPADEVCGCPLVRDVFELTGDFCRLPKRQCNRHYCWEKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QSKTYCKRLQVLCPEHSRDPKVPADEVCGCPLVRDVFELTGDFCRLPKRQCNRHYCWEKL
              550       560       570       580       590       600

        600       610       620       630       640       650      
pF1KB7 RRAEVDLERVRVWYKLDELFEQERNVRTAMTNRAGLLALMLHQTIQHDPLTTDLRSSADR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RRAEVDLERVRVWYKLDELFEQERNVRTAMTNRAGLLALMLHQTIQHDPLTTDLRSSADR
              610       620       630       640       650       660




656 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 10:01:17 2016 done: Sat Nov  5 10:01:18 2016
 Total Scan time:  3.550 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]