Result of FASTA (ccds) for
pF1KB7890
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7890, 652 aa
1>>>pF1KB7890 652 - 652 aa - 652 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.1034+/-0.000987; mu= 12.7616+/- 0.060
mean_var=162.5744+/-31.682, 0's: 0 Z-trim(109.6): 64 B-trim: 0 in 0/55
Lambda= 0.100588
statistics sampled from 10938 (10999) to 10938 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.689), E-opt: 0.2 (0.338), width: 16
Scan time: 3.860
The best scores are: opt bits E(32554)
CCDS54007.1 BRD7 gene_id:29117|Hs108|chr16 ( 652) 4325 640.2 2.6e-183
CCDS10742.1 BRD7 gene_id:29117|Hs108|chr16 ( 651) 4306 637.4 1.8e-182
CCDS34127.2 BRD9 gene_id:65980|Hs108|chr5 ( 597) 875 139.5 1.3e-32
CCDS34128.2 BRD9 gene_id:65980|Hs108|chr5 ( 544) 427 74.5 4.5e-13
>>CCDS54007.1 BRD7 gene_id:29117|Hs108|chr16 (652 aa)
initn: 4325 init1: 4325 opt: 4325 Z-score: 3404.4 bits: 640.2 E(32554): 2.6e-183
Smith-Waterman score: 4325; 100.0% identity (100.0% similar) in 652 aa overlap (1-652:1-652)
10 20 30 40 50 60
pF1KB7 MGKKHKKHKSDKHLYEEYVEKPLKLVLKVGGNEVTELSTGSSGHDSSLFEDKNDHDKHKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MGKKHKKHKSDKHLYEEYVEKPLKLVLKVGGNEVTELSTGSSGHDSSLFEDKNDHDKHKD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RKRKKRKKGEKQIPGEEKGRKRRRVKEDKKKRDRDRVENEAEKDLQCHAPVRLDLPPEKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 RKRKKRKKGEKQIPGEEKGRKRRRVKEDKKKRDRDRVENEAEKDLQCHAPVRLDLPPEKP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 LTSSLAKQEEVEQTPLQEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LTSSLAKQEEVEQTPLQEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFST
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 MKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKLLHSGMKILSQERIQSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKLLHSGMKILSQERIQSL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 KQSIDFMADLQKTRKQKDGTDTSQSGEDGGCWQREREDSGDAEAHAFKSPSKENKKKDKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KQSIDFMADLQKTRKQKDGTDTSQSGEDGGCWQREREDSGDAEAHAFKSPSKENKKKDKD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 MLEDKFKSNNLEREQEQLDRIVKESGGKLTRRLVNSQCEFERRKPDGTTTLGLLHPVDPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MLEDKFKSNNLEREQEQLDRIVKESGGKLTRRLVNSQCEFERRKPDGTTTLGLLHPVDPI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 VGEPGYCPVRLGMTTGRLQSGVNTLQGFKEDKRNKVTPVLYLNYGPYSSYAPHYDSTFAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VGEPGYCPVRLGMTTGRLQSGVNTLQGFKEDKRNKVTPVLYLNYGPYSSYAPHYDSTFAN
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 ISKDDSDLIYSTYGEDSDLPSDFSIHEFLATCQDYPYVMADSLLDVLTKGGHSRTLQEME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ISKDDSDLIYSTYGEDSDLPSDFSIHEFLATCQDYPYVMADSLLDVLTKGGHSRTLQEME
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB7 MSLPEDEGHTRTLDTAKEMEQITEVEPPGRLDSSTQDRLIALKAVTNFGVPVEVFDSEEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MSLPEDEGHTRTLDTAKEMEQITEVEPPGRLDSSTQDRLIALKAVTNFGVPVEVFDSEEA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB7 EIFQKKLDETTRLLRELQEAQNERLSTRPPPNMICLLGPSYREMHLAEQVTNNLKELAQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EIFQKKLDETTRLLRELQEAQNERLSTRPPPNMICLLGPSYREMHLAEQVTNNLKELAQQ
550 560 570 580 590 600
610 620 630 640 650
pF1KB7 VTPGDIVSTYGVRKAMGISIPSPVMENNFVDLTEDTEEPKKTDVAECGPGGS
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VTPGDIVSTYGVRKAMGISIPSPVMENNFVDLTEDTEEPKKTDVAECGPGGS
610 620 630 640 650
>>CCDS10742.1 BRD7 gene_id:29117|Hs108|chr16 (651 aa)
initn: 3336 init1: 3336 opt: 4306 Z-score: 3389.5 bits: 637.4 E(32554): 1.8e-182
Smith-Waterman score: 4306; 99.8% identity (99.8% similar) in 652 aa overlap (1-652:1-651)
10 20 30 40 50 60
pF1KB7 MGKKHKKHKSDKHLYEEYVEKPLKLVLKVGGNEVTELSTGSSGHDSSLFEDKNDHDKHKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MGKKHKKHKSDKHLYEEYVEKPLKLVLKVGGNEVTELSTGSSGHDSSLFEDKNDHDKHKD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RKRKKRKKGEKQIPGEEKGRKRRRVKEDKKKRDRDRVENEAEKDLQCHAPVRLDLPPEKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RKRKKRKKGEKQIPGEEKGRKRRRVKEDKKKRDRDRVENEAEKDLQCHAPVRLDLPPEKP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 LTSSLAKQEEVEQTPLQEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LTSSLAKQEEVEQTPLQEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFST
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 MKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKLLHSGMKILSQERIQSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKLLHSGMKILSQERIQSL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 KQSIDFMADLQKTRKQKDGTDTSQSGEDGGCWQREREDSGDAEAHAFKSPSKENKKKDKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KQSIDFMADLQKTRKQKDGTDTSQSGEDGGCWQREREDSGDAEAHAFKSPSKENKKKDKD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 MLEDKFKSNNLEREQEQLDRIVKESGGKLTRRLVNSQCEFERRKPDGTTTLGLLHPVDPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MLEDKFKSNNLEREQEQLDRIVKESGGKLTRRLVNSQCEFERRKPDGTTTLGLLHPVDPI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 VGEPGYCPVRLGMTTGRLQSGVNTLQGFKEDKRNKVTPVLYLNYGPYSSYAPHYDSTFAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VGEPGYCPVRLGMTTGRLQSGVNTLQGFKEDKRNKVTPVLYLNYGPYSSYAPHYDSTFAN
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 ISKDDSDLIYSTYGEDSDLPSDFSIHEFLATCQDYPYVMADSLLDVLTKGGHSRTLQEME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ISKDDSDLIYSTYGEDSDLPSDFSIHEFLATCQDYPYVMADSLLDVLTKGGHSRTLQEME
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB7 MSLPEDEGHTRTLDTAKEMEQITEVEPPGRLDSSTQDRLIALKAVTNFGVPVEVFDSEEA
:::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
CCDS10 MSLPEDEGHTRTLDTAKEME-ITEVEPPGRLDSSTQDRLIALKAVTNFGVPVEVFDSEEA
490 500 510 520 530
550 560 570 580 590 600
pF1KB7 EIFQKKLDETTRLLRELQEAQNERLSTRPPPNMICLLGPSYREMHLAEQVTNNLKELAQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EIFQKKLDETTRLLRELQEAQNERLSTRPPPNMICLLGPSYREMHLAEQVTNNLKELAQQ
540 550 560 570 580 590
610 620 630 640 650
pF1KB7 VTPGDIVSTYGVRKAMGISIPSPVMENNFVDLTEDTEEPKKTDVAECGPGGS
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VTPGDIVSTYGVRKAMGISIPSPVMENNFVDLTEDTEEPKKTDVAECGPGGS
600 610 620 630 640 650
>>CCDS34127.2 BRD9 gene_id:65980|Hs108|chr5 (597 aa)
initn: 1033 init1: 715 opt: 875 Z-score: 699.1 bits: 139.5 E(32554): 1.3e-32
Smith-Waterman score: 1171; 36.0% identity (68.0% similar) in 600 aa overlap (1-585:1-562)
10 20 30 40 50
pF1KB7 MGKKHKKHKSD-KHLYEEY----VEKPLKLVLKVGGNEVTELSTGSSGHDSSLFEDKNDH
:::::::::.. . ::.: .::::::::::::.:::::: .:::::: ..:..::
CCDS34 MGKKHKKHKAEWRSSYEDYADKPLEKPLKLVLKVGGSEVTELS--GSGHDSSYYDDRSDH
10 20 30 40 50
60 70 80 90 100 110
pF1KB7 DK--HKDRKRKKRKKGEKQIPGEEKGRKRRRVKEDKKKRDRDRVENEAEKD-LQCHAPVR
.. ::..:.::.::.::. ... :..:. .: :.::.:.. ..:.: : .. :.
CCDS34 ERERHKEKKKKKKKKSEKEKHLDDEERRKRK-EEKKRKREREHCDTEGEADDFDPGKKVE
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB7 LDLPPEKPLTSSLAKQEEVEQTPLQEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMII
.. ::..:. . .. : :.::.:. :....:::::::: .::.::::: :::::::::
CCDS34 VEPPPDRPVRACRTQPAENESTPIQQLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMII
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB7 KHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKLLHSGMKIL
::::::.:::.:: :.:.:. :.: .::::: ::: ::.:.:.::: :::.::.:.:..
CCDS34 KHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKILHAGFKMM
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB7 SQERIQSLKQSIDFMADLQKTRKQKDGTDTSQSGEDGGCWQREREDSGDAEAHAFKSPSK
:.. .: . : .. . ..:.. . .. : .. . :. ..
CCDS34 SKQ--AALLGNEDTAVEEPVPEVVPVQVETAK---------KSKKPSREVISCMFEPEGN
240 250 260 270 280
300 310 320 330 340 350
pF1KB7 ENKKKDKDMLEDKFKSNNLEREQEQLDRIVKESGGKLTRRLVNSQCEFERRKPDGTTTLG
. : :. :. ... . :. ...: : ... . .:. ::. .
CCDS34 ACSLTD---------STAEEHVLALVEHAADEARDRINRFLPGGKMGYLKRNGDGSLLYS
290 300 310 320 330
360 370 380 390 400 410
pF1KB7 LLHPVDPIVGEPGYCPVRLGMTTGRLQSGVNTLQGFKEDKRNKVTPVLYLNYGPYSSYAP
... ..: . : :: :. ...: : .:: :::...::::: .:. . .. .
CCDS34 VVNTAEPDADEEETHPVDLSSLSSKLLPGFTTL-GFKDERRNKVT---FLS-SATTALSM
340 350 360 370 380 390
420 430 440 450 460 470
pF1KB7 HYDSTFANISKDDSDLIYSTYGEDSDLPSDFSIHEFLATCQDYPYVMADSLLDVLTKGGH
. .:.:.....:. .:.::.::... . .:..::. .: ..:.::: .: : :
CCDS34 QNNSVFGDLKSDEMELLYSAYGDETGVQCALSLQEFVKDAGSYSKKVVDDLLDQITGGDH
400 410 420 430 440 450
480 490 500 510 520
pF1KB7 SRTLQEMEMSL-----PEDEGHT-RTL-DTAKEMEQITEVEPPGRLDSSTQDRLIALKAV
:::: .... : ::... :: :... . .. .. : : . .. .
CCDS34 SRTLFQLKQRRNVPMKPPDEAKVGDTLGDSSSSVLEFMSMK-------SYPDVSVDISML
460 470 480 490 500
530 540 550 560 570 580
pF1KB7 TNFGVPVEVFDSEEAEIFQKKLDETTRLLRELQEAQNERLSTRPPPNMICLLGPSYREMH
...: . .: ..... .:::::.::..:.::: :: ..:: :. : . : :..:
CCDS34 SSLGKVKKELDPDDSHL---NLDETTKLLQDLHEAQAERGGSRPSSNLSSLSNASERDQH
510 520 530 540 550 560
590 600 610 620 630 640
pF1KB7 LAEQVTNNLKELAQQVTPGDIVSTYGVRKAMGISIPSPVMENNFVDLTEDTEEPKKTDVA
CCDS34 HLGSPSRLSVGEQPDVTHDPYEFLQSPEPAASAKT
570 580 590
>>CCDS34128.2 BRD9 gene_id:65980|Hs108|chr5 (544 aa)
initn: 717 init1: 422 opt: 427 Z-score: 348.2 bits: 74.5 E(32554): 4.5e-13
Smith-Waterman score: 723; 29.0% identity (61.0% similar) in 534 aa overlap (59-585:13-509)
30 40 50 60 70 80
pF1KB7 VGGNEVTELSTGSSGHDSSLFEDKNDHDKHKDRKRKKRKKGEKQIPGEEKGRKRRRVKED
: :::..:.. ... . . .: ...
CCDS34 MMTGQTMSERGTKKRKRRRRRSPRRRSIWTMRKEGSERKRRS
10 20 30 40
90 100 110 120 130 140
pF1KB7 KKKRDRDRVENEAEKDLQCHAPVRLDLPPEKPLTSSLAKQEEVEQTPLQEALNQLMRQLQ
..: .. : : : . : . .: ... .... : ..
CCDS34 GSERGSTVTRRERLTTLILGRRWRWSRPQIGQSERAGHSQPKMRAHLFSNSWNTSSASF-
50 60 70 80 90 100
150 160 170 180 190 200
pF1KB7 RKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAM
.:: .::.::::: :::::::::::::::.:::.:: :.:.:. :.: .::::: :::
CCDS34 -RDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAM
110 120 130 140 150 160
210 220 230 240 250 260
pF1KB7 IYNKPETIYYKAAKKLLHSGMKILSQERIQSLKQSIDFMADLQKTRKQKDGTDTSQSGED
::.:.:.::: :::.::.:.:..:.. .: . : .. . ..:..
CCDS34 TYNRPDTVYYKLAKKILHAGFKMMSKQ--AALLGNEDTAVEEPVPEVVPVQVETAK----
170 180 190 200 210
270 280 290 300 310 320
pF1KB7 GGCWQREREDSGDAEAHAFKSPSKENKKKDKDMLEDKFKSNNLEREQEQLDRIVKESGGK
. .. : .. . :. .. . : :. :. ... . :. .
CCDS34 -----KSKKPSREVISCMFEPEGNACSLTD---------STAEEHVLALVEHAADEARDR
220 230 240 250 260
330 340 350 360 370 380
pF1KB7 LTRRLVNSQCEFERRKPDGTTTLGLLHPVDPIVGEPGYCPVRLGMTTGRLQSGVNTLQGF
..: : ... . .:. ::. .... ..: . : :: :. ...: : .:: ::
CCDS34 INRFLPGGKMGYLKRNGDGSLLYSVVNTAEPDADEEETHPVDLSSLSSKLLPGFTTL-GF
270 280 290 300 310
390 400 410 420 430 440
pF1KB7 KEDKRNKVTPVLYLNYGPYSSYAPHYDSTFANISKDDSDLIYSTYGEDSDLPSDFSIHEF
:...::::: .:. . .. . . .:.:.....:. .:.::.::... . .:..::
CCDS34 KDERRNKVT---FLS-SATTALSMQNNSVFGDLKSDEMELLYSAYGDETGVQCALSLQEF
320 330 340 350 360 370
450 460 470 480 490 500
pF1KB7 LATCQDYPYVMADSLLDVLTKGGHSRTLQEMEMSL-----PEDEGHT-RTL-DTAKEMEQ
. .: ..:.::: .: : ::::: .... : ::... :: :... . .
CCDS34 VKDAGSYSKKVVDDLLDQITGGDHSRTLFQLKQRRNVPMKPPDEAKVGDTLGDSSSSVLE
380 390 400 410 420 430
510 520 530 540 550 560
pF1KB7 ITEVEPPGRLDSSTQDRLIALKAVTNFGVPVEVFDSEEAEIFQKKLDETTRLLRELQEAQ
. .. : : . .. ....: . .: ..... .:::::.::..:.:::
CCDS34 FMSMK-------SYPDVSVDISMLSSLGKVKKELDPDDSHL---NLDETTKLLQDLHEAQ
440 450 460 470 480
570 580 590 600 610 620
pF1KB7 NERLSTRPPPNMICLLGPSYREMHLAEQVTNNLKELAQQVTPGDIVSTYGVRKAMGISIP
:: ..:: :. : . : :..:
CCDS34 AERGGSRPSSNLSSLSNASERDQHHLGSPSRLSVGEQPDVTHDPYEFLQSPEPAASAKT
490 500 510 520 530 540
652 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 10:00:29 2016 done: Sat Nov 5 10:00:29 2016
Total Scan time: 3.860 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]