FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7878, 639 aa
  1>>>pF1KB7878 639 - 639 aa - 639 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.5788+/-0.00112; mu= 5.4515+/- 0.068
 mean_var=223.0084+/-44.981, 0's: 0 Z-trim(110.6): 33  B-trim: 169 in 1/51
 Lambda= 0.085884
 statistics sampled from 11689 (11701) to 11689 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.708), E-opt: 0.2 (0.359), width:  16
 Scan time:  4.180

The best scores are:                                      opt bits E(32554)
CCDS34293.1 CREBRF gene_id:153222|Hs108|chr5       ( 639) 4246 539.5 5.2e-153
CCDS54948.1 CREBRF gene_id:153222|Hs108|chr5       ( 417) 2739 352.6 6.2e-97


>>CCDS34293.1 CREBRF gene_id:153222|Hs108|chr5            (639 aa)
 initn: 4246 init1: 4246 opt: 4246  Z-score: 2860.5  bits: 539.5 E(32554): 5.2e-153
Smith-Waterman score: 4246; 100.0% identity (100.0% similar) in 639 aa overlap (1-639:1-639)

               10        20        30        40        50        60
pF1KB7 MPQPSVSGMDPPFGDAFRSHTFSEQTLMSTDLLANSSDPDFMYELDREMNYQQNPRDNFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MPQPSVSGMDPPFGDAFRSHTFSEQTLMSTDLLANSSDPDFMYELDREMNYQQNPRDNFL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 SLEDCKDIENLESFTDVLDNEGALTSNWEQWDTYCEDLTKYTKLTSCDIWGTKEVDYLGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SLEDCKDIENLESFTDVLDNEGALTSNWEQWDTYCEDLTKYTKLTSCDIWGTKEVDYLGL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 DDFSSPYQDEEVISKTPTLAQLNSEDSQSVSDSLYYPDSLFSVKQNPLPSSFPGKKITSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DDFSSPYQDEEVISKTPTLAQLNSEDSQSVSDSLYYPDSLFSVKQNPLPSSFPGKKITSR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 AAAPVCSSKTLQAEVPLSDCVQKASKPTSSTQIMVKTNMYHNEKVNFHVECKDYVKKAKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 AAAPVCSSKTLQAEVPLSDCVQKASKPTSSTQIMVKTNMYHNEKVNFHVECKDYVKKAKV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 KINPVQQSRPLLSQIHTDAAKENTCYCGAVAKRQEKKGMEPLQGHATPALPFKETQELLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KINPVQQSRPLLSQIHTDAAKENTCYCGAVAKRQEKKGMEPLQGHATPALPFKETQELLL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 SPLPQEGPGSLAAGESSSLSASTSVSDSSQKKEEHNYSLFVSDNLGEQPTKCSPEEDEED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SPLPQEGPGSLAAGESSSLSASTSVSDSSQKKEEHNYSLFVSDNLGEQPTKCSPEEDEED
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 EEDVDDEDHDEGFGSEHELSENEEEEEEEEDYEDDKDDDISDTFSEPGYENDSVEDLKEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EEDVDDEDHDEGFGSEHELSENEEEEEEEEDYEDDKDDDISDTFSEPGYENDSVEDLKEV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 TSISSRKRGKRRYFWEYSEQLTPSQQERMLRPSEWNRDTLPSNMYQKNGLHHGKYAVKKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TSISSRKRGKRRYFWEYSEQLTPSQQERMLRPSEWNRDTLPSNMYQKNGLHHGKYAVKKS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB7 RRTDVEDLTPNPKKLLQIGNELRKLNKVISDLTPVSELPLTARPRSRKEKNKLASRACRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RRTDVEDLTPNPKKLLQIGNELRKLNKVISDLTPVSELPLTARPRSRKEKNKLASRACRL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB7 KKKAQYEANKVKLWGLNTEYDNLLFVINSIKQEIVNRVQNPRDERGPNMGQKLEILIKDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KKKAQYEANKVKLWGLNTEYDNLLFVINSIKQEIVNRVQNPRDERGPNMGQKLEILIKDT
              550       560       570       580       590       600

              610       620       630         
pF1KB7 LGLPVAGQTSEFVNQVLEKTAEGNPTGGLVGLRIPTSKV
       :::::::::::::::::::::::::::::::::::::::
CCDS34 LGLPVAGQTSEFVNQVLEKTAEGNPTGGLVGLRIPTSKV
              610       620       630         

>>CCDS54948.1 CREBRF gene_id:153222|Hs108|chr5            (417 aa)
 initn: 2739 init1: 2739 opt: 2739  Z-score: 1853.8  bits: 352.6 E(32554): 6.2e-97
Smith-Waterman score: 2739; 100.0% identity (100.0% similar) in 408 aa overlap (1-408:1-408)

               10        20        30        40        50        60
pF1KB7 MPQPSVSGMDPPFGDAFRSHTFSEQTLMSTDLLANSSDPDFMYELDREMNYQQNPRDNFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MPQPSVSGMDPPFGDAFRSHTFSEQTLMSTDLLANSSDPDFMYELDREMNYQQNPRDNFL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 SLEDCKDIENLESFTDVLDNEGALTSNWEQWDTYCEDLTKYTKLTSCDIWGTKEVDYLGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SLEDCKDIENLESFTDVLDNEGALTSNWEQWDTYCEDLTKYTKLTSCDIWGTKEVDYLGL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 DDFSSPYQDEEVISKTPTLAQLNSEDSQSVSDSLYYPDSLFSVKQNPLPSSFPGKKITSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DDFSSPYQDEEVISKTPTLAQLNSEDSQSVSDSLYYPDSLFSVKQNPLPSSFPGKKITSR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 AAAPVCSSKTLQAEVPLSDCVQKASKPTSSTQIMVKTNMYHNEKVNFHVECKDYVKKAKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 AAAPVCSSKTLQAEVPLSDCVQKASKPTSSTQIMVKTNMYHNEKVNFHVECKDYVKKAKV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 KINPVQQSRPLLSQIHTDAAKENTCYCGAVAKRQEKKGMEPLQGHATPALPFKETQELLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KINPVQQSRPLLSQIHTDAAKENTCYCGAVAKRQEKKGMEPLQGHATPALPFKETQELLL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 SPLPQEGPGSLAAGESSSLSASTSVSDSSQKKEEHNYSLFVSDNLGEQPTKCSPEEDEED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SPLPQEGPGSLAAGESSSLSASTSVSDSSQKKEEHNYSLFVSDNLGEQPTKCSPEEDEED
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 EEDVDDEDHDEGFGSEHELSENEEEEEEEEDYEDDKDDDISDTFSEPGYENDSVEDLKEV
       ::::::::::::::::::::::::::::::::::::::::::::::::            
CCDS54 EEDVDDEDHDEGFGSEHELSENEEEEEEEEDYEDDKDDDISDTFSEPGIIMLASLPD   
              370       380       390       400       410          

              430       440       450       460       470       480
pF1KB7 TSISSRKRGKRRYFWEYSEQLTPSQQERMLRPSEWNRDTLPSNMYQKNGLHHGKYAVKKS




639 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 21:14:25 2016 done: Fri Nov  4 21:14:26 2016
 Total Scan time:  4.180 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]