FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7867, 560 aa
  1>>>pF1KB7867 560 - 560 aa - 560 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.8126+/-0.000855; mu= 4.6682+/- 0.052
 mean_var=236.5121+/-47.411, 0's: 0 Z-trim(114.8): 37  B-trim: 75 in 1/53
 Lambda= 0.083396
 statistics sampled from 15331 (15362) to 15331 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.767), E-opt: 0.2 (0.472), width:  16
 Scan time:  4.200

The best scores are:                                      opt bits E(32554)
CCDS32758.1 CBX4 gene_id:8535|Hs108|chr17          ( 560) 3871 478.6 8.4e-135
CCDS13986.1 CBX7 gene_id:23492|Hs108|chr22         ( 251)  447 66.4 4.8e-11


>>CCDS32758.1 CBX4 gene_id:8535|Hs108|chr17               (560 aa)
 initn: 3871 init1: 3871 opt: 3871  Z-score: 2533.6  bits: 478.6 E(32554): 8.4e-135
Smith-Waterman score: 3871; 100.0% identity (100.0% similar) in 560 aa overlap (1-560:1-560)

               10        20        30        40        50        60
pF1KB7 MELPAVGEHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MELPAVGEHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 ERQEQLMGYRKRGPKPKPLVVQVPTFARRSNVLTGLQDSSTDNRAKLDLGAQGKGQGHQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ERQEQLMGYRKRGPKPKPLVVQVPTFARRSNVLTGLQDSSTDNRAKLDLGAQGKGQGHQY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 ELNSKKHHQYQPHSKERAGKPPPPGKSGKYYYQLNSKKHHPYQPDPKMYDLQYQGGHKEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ELNSKKHHQYQPHSKERAGKPPPPGKSGKYYYQLNSKKHHPYQPDPKMYDLQYQGGHKEA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 PSPTCPDLGAKSHPPDKWAQGAGAKGYLGAVKPLAGAAGAPGKGSEKGPPNGMMPAPKEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PSPTCPDLGAKSHPPDKWAQGAGAKGYLGAVKPLAGAAGAPGKGSEKGPPNGMMPAPKEA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 VTGNGIGGKMKIVKNKNKNGRIVIVMSKYMENGMQAVKIKSGEVAEGEARSPSHKKRAAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VTGNGIGGKMKIVKNKNKNGRIVIVMSKYMENGMQAVKIKSGEVAEGEARSPSHKKRAAD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 ERHPPADRTFKKAAGAEEKKVEAPPKRREEEVSGVSDPQPQDAGSRKLSPTKEAFGEQPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ERHPPADRTFKKAAGAEEKKVEAPPKRREEEVSGVSDPQPQDAGSRKLSPTKEAFGEQPL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 QLTTKPDLLAWDPARNTHPPSHHPHPHPHHHHHHHHHHHHAVGLNLSHVRKRCLSETHGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QLTTKPDLLAWDPARNTHPPSHHPHPHPHHHHHHHHHHHHAVGLNLSHVRKRCLSETHGE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 REPCKKRLTARSISTPTCLGGSPAAERPADLPPAAALPQPEVILLDSDLDEPIDLRCVKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 REPCKKRLTARSISTPTCLGGSPAAERPADLPPAAALPQPEVILLDSDLDEPIDLRCVKT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB7 RSEAGEPPSSLQVKPETPASAAVAVAAAAAPTTTAEKPPAEAQDEPAESLSEFKPFFGNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RSEAGEPPSSLQVKPETPASAAVAVAAAAAPTTTAEKPPAEAQDEPAESLSEFKPFFGNI
              490       500       510       520       530       540

              550       560
pF1KB7 IITDVTANCLTVTFKEYVTV
       ::::::::::::::::::::
CCDS32 IITDVTANCLTVTFKEYVTV
              550       560

>>CCDS13986.1 CBX7 gene_id:23492|Hs108|chr22              (251 aa)
 initn: 505 init1: 426 opt: 447  Z-score: 311.8  bits: 66.4 E(32554): 4.8e-11
Smith-Waterman score: 447; 39.0% identity (63.8% similar) in 213 aa overlap (1-206:1-207)

               10        20        30        40        50        60
pF1KB7 MELPAVGEHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNR
       ::: :.::.:::::::.:::.:::.:::::::.:: :::.::::::.::::::..:....
CCDS13 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK
               10        20        30        40        50        60

               70        80          90       100       110        
pF1KB7 ERQEQLMGYRKRGPKPKPLVVQ--VPTFARRSNVLTGLQDSSTDNRAKLDLGA-QGKGQG
       :....  :::::::::: :..:       : :.   : .    .    :  :. .:  ..
CCDS13 EERDRASGYRKRGPKPKRLLLQRLYSMDLRSSHKAKGKEKLCFSLTCPLGSGSPEGVVKA
               70        80        90       100       110       120

       120       130       140       150       160       170       
pF1KB7 HQYELNSKKHHQYQPHSKERAGKPPPPGKSGKYYYQLNSKKHHPYQPDPKMYDLQYQGGH
          :: .:      :       ::    .... : .:. ::  :  :. . .. . .   
CCDS13 GAPELVDKG--PLVPTLPFPLRKP----RKAHKYLRLSRKKFPPRGPNLESHSHRRELFL
                130       140           150       160       170    

       180       190           200       210       220       230   
pF1KB7 KEAPSPTCPDLGAK----SHPPDKWAQGAGAKGYLGAVKPLAGAAGAPGKGSEKGPPNGM
       .: :.:   . ...    ..::.. :..  :.:                           
CCDS13 QEPPAPDVLQAAGEWEPAAQPPEEEADADLAEGPPPWTPALPSSEVTVTDITANSITVTF
          180       190       200       210       220       230    

           240       250       260       270       280       290   
pF1KB7 MPAPKEAVTGNGIGGKMKIVKNKNKNGRIVIVMSKYMENGMQAVKIKSGEVAEGEARSPS
                                                                   
CCDS13 REAQAAEGFFRDRSGKF                                           
          240       250                                            




560 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 21:11:49 2016 done: Fri Nov  4 21:11:50 2016
 Total Scan time:  4.200 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]