Result of FASTA (omim) for
pF1KB7835
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7835, 540 aa
1>>>pF1KB7835 540 - 540 aa - 540 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.6103+/-0.000428; mu= -2.1975+/- 0.027
mean_var=193.1965+/-40.109, 0's: 0 Z-trim(117.0): 45 B-trim: 1184 in 1/52
Lambda= 0.092273
statistics sampled from 28581 (28626) to 28581 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.682), E-opt: 0.2 (0.336), width: 16
Scan time: 10.740
The best scores are: opt bits E(85289)
XP_011536701 (OMIM: 604909) PREDICTED: CCR4-NOT tr ( 540) 3666 500.8 4.3e-141
NP_001186231 (OMIM: 604909) CCR4-NOT transcription ( 540) 3666 500.8 4.3e-141
NP_001186232 (OMIM: 604909) CCR4-NOT transcription ( 540) 3666 500.8 4.3e-141
NP_055330 (OMIM: 604909) CCR4-NOT transcription co ( 540) 3666 500.8 4.3e-141
XP_006719493 (OMIM: 604909) PREDICTED: CCR4-NOT tr ( 531) 3568 487.8 3.6e-137
XP_016874837 (OMIM: 604909) PREDICTED: CCR4-NOT tr ( 531) 3568 487.8 3.6e-137
XP_006719492 (OMIM: 604909) PREDICTED: CCR4-NOT tr ( 531) 3568 487.8 3.6e-137
XP_016874838 (OMIM: 604909) PREDICTED: CCR4-NOT tr ( 531) 3568 487.8 3.6e-137
XP_016874839 (OMIM: 604909) PREDICTED: CCR4-NOT tr ( 520) 3538 483.8 5.6e-136
XP_016874841 (OMIM: 604909) PREDICTED: CCR4-NOT tr ( 520) 3538 483.8 5.6e-136
XP_011536702 (OMIM: 604909) PREDICTED: CCR4-NOT tr ( 520) 3538 483.8 5.6e-136
XP_016874840 (OMIM: 604909) PREDICTED: CCR4-NOT tr ( 520) 3538 483.8 5.6e-136
XP_006719495 (OMIM: 604909) PREDICTED: CCR4-NOT tr ( 479) 2417 334.5 4.3e-91
XP_016874843 (OMIM: 604909) PREDICTED: CCR4-NOT tr ( 394) 2218 308.0 3.4e-83
XP_016874842 (OMIM: 604909) PREDICTED: CCR4-NOT tr ( 394) 2218 308.0 3.4e-83
XP_006719496 (OMIM: 604909) PREDICTED: CCR4-NOT tr ( 403) 2218 308.0 3.5e-83
>>XP_011536701 (OMIM: 604909) PREDICTED: CCR4-NOT transc (540 aa)
initn: 3666 init1: 3666 opt: 3666 Z-score: 2654.1 bits: 500.8 E(85289): 4.3e-141
Smith-Waterman score: 3666; 100.0% identity (100.0% similar) in 540 aa overlap (1-540:1-540)
10 20 30 40 50 60
pF1KB7 MVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB7 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
490 500 510 520 530 540
>>NP_001186231 (OMIM: 604909) CCR4-NOT transcription com (540 aa)
initn: 3666 init1: 3666 opt: 3666 Z-score: 2654.1 bits: 500.8 E(85289): 4.3e-141
Smith-Waterman score: 3666; 100.0% identity (100.0% similar) in 540 aa overlap (1-540:1-540)
10 20 30 40 50 60
pF1KB7 MVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB7 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
490 500 510 520 530 540
>>NP_001186232 (OMIM: 604909) CCR4-NOT transcription com (540 aa)
initn: 3666 init1: 3666 opt: 3666 Z-score: 2654.1 bits: 500.8 E(85289): 4.3e-141
Smith-Waterman score: 3666; 100.0% identity (100.0% similar) in 540 aa overlap (1-540:1-540)
10 20 30 40 50 60
pF1KB7 MVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB7 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
490 500 510 520 530 540
>>NP_055330 (OMIM: 604909) CCR4-NOT transcription comple (540 aa)
initn: 3666 init1: 3666 opt: 3666 Z-score: 2654.1 bits: 500.8 E(85289): 4.3e-141
Smith-Waterman score: 3666; 100.0% identity (100.0% similar) in 540 aa overlap (1-540:1-540)
10 20 30 40 50 60
pF1KB7 MVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB7 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
490 500 510 520 530 540
>>XP_006719493 (OMIM: 604909) PREDICTED: CCR4-NOT transc (531 aa)
initn: 3567 init1: 3567 opt: 3568 Z-score: 2583.7 bits: 487.8 E(85289): 3.6e-137
Smith-Waterman score: 3568; 99.4% identity (99.6% similar) in 529 aa overlap (12-540:3-531)
10 20 30 40 50 60
pF1KB7 MVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
:. :::::::::::::::::::::::::::::::::::::::::::::
XP_006 MLKEVAQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB7 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB7 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB7 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB7 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB7 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
360 370 380 390 400 410
430 440 450 460 470 480
pF1KB7 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
420 430 440 450 460 470
490 500 510 520 530 540
pF1KB7 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
480 490 500 510 520 530
>>XP_016874837 (OMIM: 604909) PREDICTED: CCR4-NOT transc (531 aa)
initn: 3567 init1: 3567 opt: 3568 Z-score: 2583.7 bits: 487.8 E(85289): 3.6e-137
Smith-Waterman score: 3568; 99.4% identity (99.6% similar) in 529 aa overlap (12-540:3-531)
10 20 30 40 50 60
pF1KB7 MVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
:. :::::::::::::::::::::::::::::::::::::::::::::
XP_016 MLKEVAQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB7 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB7 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB7 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB7 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB7 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
360 370 380 390 400 410
430 440 450 460 470 480
pF1KB7 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
420 430 440 450 460 470
490 500 510 520 530 540
pF1KB7 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
480 490 500 510 520 530
>>XP_006719492 (OMIM: 604909) PREDICTED: CCR4-NOT transc (531 aa)
initn: 3567 init1: 3567 opt: 3568 Z-score: 2583.7 bits: 487.8 E(85289): 3.6e-137
Smith-Waterman score: 3568; 99.4% identity (99.6% similar) in 529 aa overlap (12-540:3-531)
10 20 30 40 50 60
pF1KB7 MVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
:. :::::::::::::::::::::::::::::::::::::::::::::
XP_006 MLKEVAQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB7 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB7 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB7 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB7 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB7 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
360 370 380 390 400 410
430 440 450 460 470 480
pF1KB7 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
420 430 440 450 460 470
490 500 510 520 530 540
pF1KB7 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
480 490 500 510 520 530
>>XP_016874838 (OMIM: 604909) PREDICTED: CCR4-NOT transc (531 aa)
initn: 3567 init1: 3567 opt: 3568 Z-score: 2583.7 bits: 487.8 E(85289): 3.6e-137
Smith-Waterman score: 3568; 99.4% identity (99.6% similar) in 529 aa overlap (12-540:3-531)
10 20 30 40 50 60
pF1KB7 MVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
:. :::::::::::::::::::::::::::::::::::::::::::::
XP_016 MLKEVAQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB7 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB7 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB7 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB7 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB7 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
360 370 380 390 400 410
430 440 450 460 470 480
pF1KB7 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
420 430 440 450 460 470
490 500 510 520 530 540
pF1KB7 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
480 490 500 510 520 530
>>XP_016874839 (OMIM: 604909) PREDICTED: CCR4-NOT transc (520 aa)
initn: 3538 init1: 3538 opt: 3538 Z-score: 2562.3 bits: 483.8 E(85289): 5.6e-136
Smith-Waterman score: 3538; 100.0% identity (100.0% similar) in 520 aa overlap (21-540:1-520)
10 20 30 40 50 60
pF1KB7 MVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
::::::::::::::::::::::::::::::::::::::::
XP_016 MFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
10 20 30 40
70 80 90 100 110 120
pF1KB7 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB7 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB7 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB7 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB7 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
290 300 310 320 330 340
370 380 390 400 410 420
pF1KB7 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
350 360 370 380 390 400
430 440 450 460 470 480
pF1KB7 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
410 420 430 440 450 460
490 500 510 520 530 540
pF1KB7 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
470 480 490 500 510 520
>>XP_016874841 (OMIM: 604909) PREDICTED: CCR4-NOT transc (520 aa)
initn: 3538 init1: 3538 opt: 3538 Z-score: 2562.3 bits: 483.8 E(85289): 5.6e-136
Smith-Waterman score: 3538; 100.0% identity (100.0% similar) in 520 aa overlap (21-540:1-520)
10 20 30 40 50 60
pF1KB7 MVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
::::::::::::::::::::::::::::::::::::::::
XP_016 MFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
10 20 30 40
70 80 90 100 110 120
pF1KB7 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB7 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB7 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB7 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB7 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
290 300 310 320 330 340
370 380 390 400 410 420
pF1KB7 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
350 360 370 380 390 400
430 440 450 460 470 480
pF1KB7 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
410 420 430 440 450 460
490 500 510 520 530 540
pF1KB7 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
470 480 490 500 510 520
540 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 22:32:59 2016 done: Fri Nov 4 22:33:00 2016
Total Scan time: 10.740 Total Display time: 0.110
Function used was FASTA [36.3.4 Apr, 2011]