FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7835, 540 aa
  1>>>pF1KB7835 540 - 540 aa - 540 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.9509+/-0.00101; mu= 1.0902+/- 0.061
 mean_var=158.4462+/-32.091, 0's: 0 Z-trim(109.3): 22  B-trim: 0 in 0/52
 Lambda= 0.101890
 statistics sampled from 10785 (10794) to 10785 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.684), E-opt: 0.2 (0.332), width:  16
 Scan time:  3.590

The best scores are:                                      opt bits E(32554)
CCDS31857.1 CNOT2 gene_id:4848|Hs108|chr12         ( 540) 3666 551.0 1.3e-156


>>CCDS31857.1 CNOT2 gene_id:4848|Hs108|chr12              (540 aa)
 initn: 3666 init1: 3666 opt: 3666  Z-score: 2925.4  bits: 551.0 E(32554): 1.3e-156
Smith-Waterman score: 3666; 100.0% identity (100.0% similar) in 540 aa overlap (1-540:1-540)

               10        20        30        40        50        60
pF1KB7 MVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB7 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
              490       500       510       520       530       540




540 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:32:58 2016 done: Fri Nov  4 22:32:59 2016
 Total Scan time:  3.590 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]