FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7788, 514 aa
  1>>>pF1KB7788 514 - 514 aa - 514 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4250+/-0.000743; mu= 13.0319+/- 0.045
 mean_var=89.1014+/-17.654, 0's: 0 Z-trim(110.7): 58  B-trim: 0 in 0/50
 Lambda= 0.135873
 statistics sampled from 11751 (11810) to 11751 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.363), width:  16
 Scan time:  3.620

The best scores are:                                      opt bits E(32554)
CCDS5741.1 HBP1 gene_id:26959|Hs108|chr7           ( 514) 3579 711.5 5.8e-205


>>CCDS5741.1 HBP1 gene_id:26959|Hs108|chr7                (514 aa)
 initn: 3579 init1: 3579 opt: 3579  Z-score: 3793.2  bits: 711.5 E(32554): 5.8e-205
Smith-Waterman score: 3579; 100.0% identity (100.0% similar) in 514 aa overlap (1-514:1-514)

               10        20        30        40        50        60
pF1KB7 MVWEVKTNQMPNAVQKLLLVMDKRASGMNDSLELLQCNENLPSSPGYNSCDEHMELDDLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 MVWEVKTNQMPNAVQKLLLVMDKRASGMNDSLELLQCNENLPSSPGYNSCDEHMELDDLP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 ELQAVQSDPTQSGMYQLSSDVSHQEYPRSSWNQNTSDIPETTYRENEVDWLTELANIATS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 ELQAVQSDPTQSGMYQLSSDVSHQEYPRSSWNQNTSDIPETTYRENEVDWLTELANIATS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSSKSEPAFPHHHWKEETPVRHER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 PQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSSKSEPAFPHHHWKEETPVRHER
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 ANSESESGIFCMSSLSDDDDLGWCNSWPSTVWHCFLKGTRLCFHKGSNKEWQDVEDFARA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 ANSESESGIFCMSSLSDDDDLGWCNSWPSTVWHCFLKGTRLCFHKGSNKEWQDVEDFARA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 EGCDNEEDLQMGIHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGLLTVECKLDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 EGCDNEEDLQMGIHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGLLTVECKLDH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 PFYVKNKGWSSFYPSLTVVQHGIPCCEVHIGDVCLPPGHPDAINFDDSGVFDTFKSYDFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 PFYVKNKGWSSFYPSLTVVQHGIPCCEVHIGDVCLPPGHPDAINFDDSGVFDTFKSYDFT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 PMDSSAVYVLSSMARQRRASLSCGGPGGQDFARSGFSKNCGSPGSSQLSSNSLYAKAVKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 PMDSSAVYVLSSMARQRRASLSCGGPGGQDFARSGFSKNCGSPGSSQLSSNSLYAKAVKN
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 HSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 HSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEER
              430       440       450       460       470       480

              490       500       510    
pF1KB7 RMYTLEAKALAEEQKRLNPDCWKRKRTNSGSQQH
       ::::::::::::::::::::::::::::::::::
CCDS57 RMYTLEAKALAEEQKRLNPDCWKRKRTNSGSQQH
              490       500       510    




514 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:18:25 2016 done: Fri Nov  4 22:18:26 2016
 Total Scan time:  3.620 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]