FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7771, 450 aa
  1>>>pF1KB7771 450 - 450 aa - 450 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.6340+/-0.000475; mu= -11.6400+/- 0.030
 mean_var=399.4559+/-80.338, 0's: 0 Z-trim(121.3): 57  B-trim: 578 in 1/55
 Lambda= 0.064171
 statistics sampled from 37530 (37629) to 37530 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.743), E-opt: 0.2 (0.441), width:  16
 Scan time:  8.610

The best scores are:                                      opt bits E(85289)
NP_004873 (OMIM: 605228) corepressor interacting w ( 450) 2996 291.5 3.1e-78


>>NP_004873 (OMIM: 605228) corepressor interacting with   (450 aa)
 initn: 2996 init1: 2996 opt: 2996  Z-score: 1525.7  bits: 291.5 E(85289): 3.1e-78
Smith-Waterman score: 2996; 100.0% identity (100.0% similar) in 450 aa overlap (1-450:1-450)

               10        20        30        40        50        60
pF1KB7 MGKSFANFMCKKDFHPASKSNIKKVWMAEQKISYDKKKQEELMQQYLKEQESYDNRLLMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MGKSFANFMCKKDFHPASKSNIKKVWMAEQKISYDKKKQEELMQQYLKEQESYDNRLLMG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 DERVKNGLNFMYEAPPGAKKENKEKEETEGETEYKFEWQKGAPREKYAKDDMNIRDQPFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 DERVKNGLNFMYEAPPGAKKENKEKEETEGETEYKFEWQKGAPREKYAKDDMNIRDQPFG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 IQVRNVRCIKCHKWGHVNTDRECPLFGLSGINASSVPTDGSGPSMHPSELIAEMRNSGFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 IQVRNVRCIKCHKWGHVNTDRECPLFGLSGINASSVPTDGSGPSMHPSELIAEMRNSGFA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 LKRNVLGRNLTANDPSQEYVASEGEEDPEVEFLKSLTTKQKQKLLRKLDRLEKKKKKKDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LKRNVLGRNLTANDPSQEYVASEGEEDPEVEFLKSLTTKQKQKLLRKLDRLEKKKKKKDR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 KKKKFQKSRSKHKKHKSSSSSSSSSSSSSSTETSESSSESESNNKEKKIQRKKRKKNKCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KKKKFQKSRSKHKKHKSSSSSSSSSSSSSSTETSESSSESESNNKEKKIQRKKRKKNKCS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 GHNNSDSEEKDKSKKRKLHEELSSSHHNREKAKEKPRFLKHESSREDSKWSHSDSDKKSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 GHNNSDSEEKDKSKKRKLHEELSSSHHNREKAKEKPRFLKHESSREDSKWSHSDSDKKSR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 THKHSPEKRGSERKEGSSRSHGREERSRRSRSRSPGSYKQRETRKRAQRNPGEEQSRRND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 THKHSPEKRGSERKEGSSRSHGREERSRRSRSRSPGSYKQRETRKRAQRNPGEEQSRRND
              370       380       390       400       410       420

              430       440       450
pF1KB7 SRSHGTDLYRGEKMYREHPGGTHTKVTQRE
       ::::::::::::::::::::::::::::::
NP_004 SRSHGTDLYRGEKMYREHPGGTHTKVTQRE
              430       440       450




450 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:30:49 2016 done: Sat Nov  5 18:30:51 2016
 Total Scan time:  8.610 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]