FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7771, 450 aa
  1>>>pF1KB7771 450 - 450 aa - 450 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.0748+/-0.00109; mu= -2.0963+/- 0.066
 mean_var=340.0661+/-67.209, 0's: 0 Z-trim(113.2): 71  B-trim: 0 in 0/53
 Lambda= 0.069549
 statistics sampled from 13762 (13817) to 13762 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.424), width:  16
 Scan time:  3.090

The best scores are:                                      opt bits E(32554)
CCDS2256.1 CIR1 gene_id:9541|Hs108|chr2            ( 450) 2996 314.3 1.6e-85


>>CCDS2256.1 CIR1 gene_id:9541|Hs108|chr2                 (450 aa)
 initn: 2996 init1: 2996 opt: 2996  Z-score: 1649.1  bits: 314.3 E(32554): 1.6e-85
Smith-Waterman score: 2996; 100.0% identity (100.0% similar) in 450 aa overlap (1-450:1-450)

               10        20        30        40        50        60
pF1KB7 MGKSFANFMCKKDFHPASKSNIKKVWMAEQKISYDKKKQEELMQQYLKEQESYDNRLLMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 MGKSFANFMCKKDFHPASKSNIKKVWMAEQKISYDKKKQEELMQQYLKEQESYDNRLLMG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 DERVKNGLNFMYEAPPGAKKENKEKEETEGETEYKFEWQKGAPREKYAKDDMNIRDQPFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 DERVKNGLNFMYEAPPGAKKENKEKEETEGETEYKFEWQKGAPREKYAKDDMNIRDQPFG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 IQVRNVRCIKCHKWGHVNTDRECPLFGLSGINASSVPTDGSGPSMHPSELIAEMRNSGFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 IQVRNVRCIKCHKWGHVNTDRECPLFGLSGINASSVPTDGSGPSMHPSELIAEMRNSGFA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 LKRNVLGRNLTANDPSQEYVASEGEEDPEVEFLKSLTTKQKQKLLRKLDRLEKKKKKKDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 LKRNVLGRNLTANDPSQEYVASEGEEDPEVEFLKSLTTKQKQKLLRKLDRLEKKKKKKDR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 KKKKFQKSRSKHKKHKSSSSSSSSSSSSSSTETSESSSESESNNKEKKIQRKKRKKNKCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 KKKKFQKSRSKHKKHKSSSSSSSSSSSSSSTETSESSSESESNNKEKKIQRKKRKKNKCS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 GHNNSDSEEKDKSKKRKLHEELSSSHHNREKAKEKPRFLKHESSREDSKWSHSDSDKKSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 GHNNSDSEEKDKSKKRKLHEELSSSHHNREKAKEKPRFLKHESSREDSKWSHSDSDKKSR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 THKHSPEKRGSERKEGSSRSHGREERSRRSRSRSPGSYKQRETRKRAQRNPGEEQSRRND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 THKHSPEKRGSERKEGSSRSHGREERSRRSRSRSPGSYKQRETRKRAQRNPGEEQSRRND
              370       380       390       400       410       420

              430       440       450
pF1KB7 SRSHGTDLYRGEKMYREHPGGTHTKVTQRE
       ::::::::::::::::::::::::::::::
CCDS22 SRSHGTDLYRGEKMYREHPGGTHTKVTQRE
              430       440       450




450 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:30:49 2016 done: Sat Nov  5 18:30:49 2016
 Total Scan time:  3.090 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]