FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7748, 488 aa
  1>>>pF1KB7748 488 - 488 aa - 488 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.9042+/-0.000999; mu= -4.2026+/- 0.061
 mean_var=379.2262+/-77.338, 0's: 0 Z-trim(116.5): 105  B-trim: 0 in 0/51
 Lambda= 0.065861
 statistics sampled from 17049 (17155) to 17049 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.805), E-opt: 0.2 (0.527), width:  16
 Scan time:  4.080

The best scores are:                                      opt bits E(32554)
CCDS1527.1 HLX gene_id:3142|Hs108|chr1             ( 488) 3272 324.5 1.6e-88


>>CCDS1527.1 HLX gene_id:3142|Hs108|chr1                  (488 aa)
 initn: 3272 init1: 3272 opt: 3272  Z-score: 1702.7  bits: 324.5 E(32554): 1.6e-88
Smith-Waterman score: 3272; 100.0% identity (100.0% similar) in 488 aa overlap (1-488:1-488)

               10        20        30        40        50        60
pF1KB7 MFAAGLAPFYASNFSLWSAAYCSSAGPGGCSFPLDPAAVKKPSFCIADILHAGVGDLGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 MFAAGLAPFYASNFSLWSAAYCSSAGPGGCSFPLDPAAVKKPSFCIADILHAGVGDLGAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PEGLAGASAAALTAHLGSVHPHASFQAAARSPLRPTPVVAPSEVPAGFPQRLSPLSAAYH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 PEGLAGASAAALTAHLGSVHPHASFQAAARSPLRPTPVVAPSEVPAGFPQRLSPLSAAYH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 HHHPQQQQQQQQPQQQQPPPPPRAGALQPPASGTRVVPNPHHSGSAPAPSSKDLKFGIDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 HHHPQQQQQQQQPQQQQPPPPPRAGALQPPASGTRVVPNPHHSGSAPAPSSKDLKFGIDR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 ILSAEFDPKVKEGNTLRDLTSLLTGGRPAGVHLSGLQPSAGQFFASLDPINEASAILSPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 ILSAEFDPKVKEGNTLRDLTSLLTGGRPAGVHLSGLQPSAGQFFASLDPINEASAILSPL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 NSNPRNSVQHQFQDTFPGPYAVLTKDTMPQTYKRKRSWSRAVFSNLQRKGLEKRFEIQKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 NSNPRNSVQHQFQDTFPGPYAVLTKDTMPQTYKRKRSWSRAVFSNLQRKGLEKRFEIQKY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 VTKPDRKQLAAMLGLTDAQVKVWFQNRRMKWRHSKEAQAQKDKDKEAGEKPSGGAPAADG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 VTKPDRKQLAAMLGLTDAQVKVWFQNRRMKWRHSKEAQAQKDKDKEAGEKPSGGAPAADG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 EQDERSPSRSEGEAESESSDSESLDMAPSDTERTEGSERSLHQTTVIKAPVTGALITASS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 EQDERSPSRSEGEAESESSDSESLDMAPSDTERTEGSERSLHQTTVIKAPVTGALITASS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 AGSGGSSGGGGNSFSFSSASSLSSSSTSAGCASSLGGGGASELLPATQPTASSAPKSPEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 AGSGGSSGGGGNSFSFSSASSLSSSSTSAGCASSLGGGGASELLPATQPTASSAPKSPEP
              430       440       450       460       470       480

               
pF1KB7 AQGALGCL
       ::::::::
CCDS15 AQGALGCL
               




488 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:09:33 2016 done: Fri Nov  4 22:09:34 2016
 Total Scan time:  4.080 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]